| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_5728 |
|---|
| Symbol | |
|---|
| ID | 4314635 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008392 |
|---|
| Strand | - |
|---|
| Start bp | 181755 |
|---|
| End bp | 183083 |
|---|
| Gene Length | 1329 bp |
|---|
| Protein Length | 442 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 638153570 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_777609 |
|---|
| Protein GI | 115360472 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.815248 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.706105 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATTCAT TGAACGCGTC TCAGATTCCG CTTGCGCCGC CCCGTCCGCT GACAGGCAGC
GACCACCGAA CGCTGGTGCT TGCCGCGCTG GGCGGCGCAC TAGAGTTTTA CGACTTCGTG
ATTTACGTGT TTTTCGCGAC GGTCATCGGT CAATTGTTCT TCCCGCAGTC GATTCCCGAC
TGGCTGCGCC AGGTGCAGAC GTTCGGGGTG TTCGCGGCCG GCTATCTCGC GCGCCCCCTC
GGCGGCGTGA TCATGGCGCA TTTCGGCGAT CTCGTCGGCC GCAAGCGCAT GTTCACGATG
AGCGTGATGC TGATGGCGCT GCCGACGTTG ATGATGGGGT TGCTGCCGAC TTACGCATCG
ATCGGGGTCG CCGCGCCCGT GCTGCTCCTG CTGTGCCGTG TGTTGCAAGG CGCGGCCGTG
GGCGGCGAAG TGCCCGGCGC GTGGGTGTTC GTGTCCGAGC ACGTGCCGCC GCGCCATGTC
GGCTATGCGT GCGGCCTGCT GACGGGCGGC CTCACGCTCG GCATCCTGCT CGGCTCGCTG
ATCGCGGCGG GGATCAACCA GCACTACTCG CATGCCGCCA TCGGCGCGTA TGCATGGCGG
ATTCCTTTCG TGGTCGGCGG ATTGTTCGGA ATCCTGTCCG CATTTCTGCG ACGCTGGCTC
CATGAAACGC CCGTGTTCAT CGACATGAAG CGCAGCCGGG CGCTGACCCG CGAAGTGCCG
TTGAAGGCGG TGCTGCGCGA TCACGGCAGG GCCGTGCTGG TGTCGATGAT GCTCACGTGG
ACGCTGACCG CCGCGATCGT CGTCGTGATC CTGATGACGC CGACGCTCGT CGCCAAGCGC
TTTCATATCG AGCCGGCGCT CGCGCTGCAG GCCAATTCGG CCGCGACGCT CTGCCTGACG
ATCGGATGTA TCGTCGCCGG TGCGGTGGCC GGACGCATCG GCACCGCCCG CACGATCTTC
TGCGGCTGCC TGCTGCTCGG CGCATCGTAT TTTTTCATGC TCCGGCAGCT CGCCGTCGAT
CCGTCATTGC TGCTGCCGCT CTACGCGGTA TCCGGTTTCT TCGTCGGCGC GGTGGCGGCG
ATCCCGGTCG CCATGGTCAA CGCATTTCCG CCGGTCGTGC GTTTTTCAGG GATCTCGTTC
TCGTATAACG TCGCGTATGC GCTGTTCGGC GGCCTGACGC CGGTGTTCGT GTCCGTGATG
CTGAAGTCGA ACCCGCACGC GGCGGAGTTT TATGTGGGCG CGCTGTGCAT CGTCGGCGCG
TTGGCGGGCT TCGCGTTGCG CCCCGCAAGG TCGTCATCCG GGATCGAGGC GGCCATTTCG
AAGCCGTGA
|
|---|
| Protein sequence | MNSLNASQIP LAPPRPLTGS DHRTLVLAAL GGALEFYDFV IYVFFATVIG QLFFPQSIPD
WLRQVQTFGV FAAGYLARPL GGVIMAHFGD LVGRKRMFTM SVMLMALPTL MMGLLPTYAS
IGVAAPVLLL LCRVLQGAAV GGEVPGAWVF VSEHVPPRHV GYACGLLTGG LTLGILLGSL
IAAGINQHYS HAAIGAYAWR IPFVVGGLFG ILSAFLRRWL HETPVFIDMK RSRALTREVP
LKAVLRDHGR AVLVSMMLTW TLTAAIVVVI LMTPTLVAKR FHIEPALALQ ANSAATLCLT
IGCIVAGAVA GRIGTARTIF CGCLLLGASY FFMLRQLAVD PSLLLPLYAV SGFFVGAVAA
IPVAMVNAFP PVVRFSGISF SYNVAYALFG GLTPVFVSVM LKSNPHAAEF YVGALCIVGA
LAGFALRPAR SSSGIEAAIS KP
|
|---|
| |