| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_5626 |
|---|
| Symbol | |
|---|
| ID | 4314493 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008392 |
|---|
| Strand | - |
|---|
| Start bp | 60165 |
|---|
| End bp | 61115 |
|---|
| Gene Length | 951 bp |
|---|
| Protein Length | 316 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638153468 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_777507 |
|---|
| Protein GI | 115360370 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0807108 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGAGAC GGCCCGTGGG AATCAACTTC GATCTGACCG ACTTGCAGGC GTTTCGCGCG
GTGGTGGAGC TGGGCAGCTT CCGGAAGGCC GCCGACGCGA TCAGCATTTC GCAACCCGCG
TTGAGTCGGC GGATCGACAA ACTCGAGGAA GCGCTCGGCG TGCGCCTGTT CGAGCGCACC
ACGCGCAGCG TCACGCTGAC CACCGTCGGG CGCGTGTTCG CGCCGAGCGC CGAGCAACTG
CTGGACGATC TCGACGTCGC GCTGCTCGGC ATCCGCGACG TGTCGTCGAG CCGCCTCGGT
CATGTGACCA TCGCGTGCGT GCCGTCGGTG GCGTACTACT TCTTGCCCAA CGTGATCGCG
AGCTATCATC GCCGCTTTCC GCGCATCCGC GTCAAGCTGC TGGATGCCGG CGCGAACGAG
GTGTTGAGCG CCGTGATCAG CGGCGAGGCC GATTTCGGCG TGAGCTTCAT GGGCAGCCAG
GAGCCCGAGA TCGACTTCAA GCTGCTGCTG CAGGAGCGCT TCGTCGCCGC GTGCCGGCGC
GACCATCCGC TCGCGCGCAA GAAGCGCGTG ACCTGGAACG AGCTTTACGA GTACGAGTAT
GTGTCGGTGG ACAAGACGTC CGGCAACCGC CTGTTGCTCG ACCAGGCGCT GACGACCGTC
GCGCCGCGTG CGCCGAGCGT ATGCGAGACG CGCCACGTGA CGACGCTGCT CGGCTTGGTC
GAAGCCGGCC TCGGCGTGGC CGCGGTGCCG TCGATGGCGA TGCCCGGACA CGACCATCCG
CTGCTCACGA GCGTGCCGCT CGTCGAACCT GTGGTGAAGC GCCGGGTCGG CATCGTGAAA
CGGCGCGGGC GCCCGCTGAC GCCGGCCGCG GAGGAGTTTC ACCGCGCGAT CGTCGACGCC
AAACGTGCGG GCGCCGGCAC CGGCGCCGCA CGCAGCGACG GATCGACGTG A
|
|---|
| Protein sequence | MGRRPVGINF DLTDLQAFRA VVELGSFRKA ADAISISQPA LSRRIDKLEE ALGVRLFERT
TRSVTLTTVG RVFAPSAEQL LDDLDVALLG IRDVSSSRLG HVTIACVPSV AYYFLPNVIA
SYHRRFPRIR VKLLDAGANE VLSAVISGEA DFGVSFMGSQ EPEIDFKLLL QERFVAACRR
DHPLARKKRV TWNELYEYEY VSVDKTSGNR LLLDQALTTV APRAPSVCET RHVTTLLGLV
EAGLGVAAVP SMAMPGHDHP LLTSVPLVEP VVKRRVGIVK RRGRPLTPAA EEFHRAIVDA
KRAGAGTGAA RSDGST
|
|---|
| |