Gene Bamb_5330 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_5330 
Symbol 
ID4314219 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008391 
Strand
Start bp2372175 
End bp2372822 
Gene Length648 bp 
Protein Length215 aa 
Translation table11 
GC content70% 
IMG OID638153171 
Producttwo component LuxR family transcriptional regulator 
Protein accessionYP_777211 
Protein GI115360073 
COG category[T] Signal transduction mechanisms
[K] Transcription 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.858277 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGATCAGGA TAATTCTGGC TGACGATCAC GCAGTCATGC GGGACGGACT GCGTCACATC 
CTGGAAACGG CCGGCGGTTT CGAGATCGTC GGCGAGGCGA GCGACGGCAC GGCCGCACTC
GCGCTGGCCG AGCGTGGCGA CGCCGACGTG CTGCTGCTCG ACCTGTCGAT GCCCGGGCCG
ACCGGCATCG AGCTGATCCG GCTCGTCAAG ACGCGCGCGC CGGCGCTGCG CATGCTGGTG
CTGACGATGC ATGCGGAGGC GCAGTACGCC GCGCGCGCGT TCAAGGCCGG CGCGACCGGC
TACCTCACGA AGGACAGCGC GACCGCCGAG CTCGTCCAGG CCGTCACGAA GGTCGCGGCG
GGCGGCGTCT ACGTGAGCCC GCAGGCGGCC GAAAGCCTCG CGCGCACGCT GCGCGCGCCC
GTCGAAATGC TGCCGCACGA ACGGTTGTCC GCGCGCGAAC TCGACGTGAT GCGCCGCATC
GTCGCGGGCC AGACGGTCAC GCGGATCGCG TCGGAACTCA CGCTGAGCAC GAAGACGGTC
AGCACCTACA AGACGCGCAT CCTCGAGAAG ATGGAGCTGC CGCACGAAGC CGCGCTGGTG
CGCTACGCGG TGCGCCACGA TCTCGACCTC GGCGTCGACG ACGCATGA
 
Protein sequence
MIRIILADDH AVMRDGLRHI LETAGGFEIV GEASDGTAAL ALAERGDADV LLLDLSMPGP 
TGIELIRLVK TRAPALRMLV LTMHAEAQYA ARAFKAGATG YLTKDSATAE LVQAVTKVAA
GGVYVSPQAA ESLARTLRAP VEMLPHERLS ARELDVMRRI VAGQTVTRIA SELTLSTKTV
STYKTRILEK MELPHEAALV RYAVRHDLDL GVDDA