| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_5119 |
|---|
| Symbol | |
|---|
| ID | 4314010 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | - |
|---|
| Start bp | 2149719 |
|---|
| End bp | 2151125 |
|---|
| Gene Length | 1407 bp |
|---|
| Protein Length | 468 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 638152962 |
|---|
| Product | sugar transferase |
|---|
| Protein accession | YP_777002 |
|---|
| Protein GI | 115359864 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2148] Sugar transferases involved in lipopolysaccharide synthesis |
|---|
| TIGRFAM ID | [TIGR03023] Undecaprenyl-phosphate glucose phosphotransferase
[TIGR03025] exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.226358 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACATAG GTATGAAACG CAAGCGGGAA AAAGGTCGCG CAACAAGAGC CATATGCGCC
GTCGATGTCC TCCTTATCAT CGTCATCGCG GGGATCACGC ACAGAGGTTC AATGTGGACT
CTCGGCGCAT TCCGAATCGA ATGGATCCTG ATCGGCGTCA GCGCACTGCT CGCGGCGTTC
ATGTTGCGGC TCGCCGGCAT CGGCCTCGAG GGCCGAACGC GTCCGGGCAC GCGGTACGCG
CTGCGCACAC TCGCCCTTTG GCTCGTCGTC CAAGGATTCG TTCTACTGAA GATGATCGCG
CTGACGCCCG TCACGATGAC GCTGCTGGCG TGGTTCTTCT ACTGGACGCT CGGTGTCGCG
ATCGCGCTCG CCGTGTTCCG GGTCGGCCTG AGCGTCGCAC GCCACCGCAG CCTGCATGTG
CCGTGCACGC CGTCGCGCGT CGCGATCGTC GGCGGCGGCG AATGGCTCGA ACGCGTCGCC
GACTCGATCG ACACGGCCGG CGCGTCGCGC TACCAGTTCG TCGGCGCGTA TCGCACCACC
GAGCACGCGG CCACGTTCGG CGAAGGCGCG TTCGTCGCCA CCGATCTTGC GTCGTTCTCG
GCCCTTGCCC GCACCGAACG CGTGGACGAG ATCTGGATCG CGCTGCCGCT TGACGACGAC
GCCACGATCA CCCGCGTGAT CAACGAATTC CGCCACGATT TCGTCGAACT GCGCCTGATG
CCGGACGTCA GCAAGCATGC GCTGTTCGGC AGCCGTGTCG AGGACATCCT CGGCGAACCG
GCGATCTCGC TGGCCGCACC GCCGCTGTCG CGCGGTGCAC GGCTCGCGAA GGCGATCTTC
GACCGCGCTT TTGCGGCCGT CGTGCTGGTC GTGCTGATGC CGCTGCTGCT CGTCGTCGCC
GCGGCCATCA AGCTGACGTC GCCGGGGCCC GTGCTGTTCA CGCAGAAGCG GCGCGGCGCG
GATGGCCAGA CCTTCGACAT CTACAAGTTC CGCACGATGC GCGTGCATGC CGAACCAGCC
GGCACCGTCG CGCAGGCCAC GCGCAACGAC CCGCGCGTGA CGAAGGTCGG CGCGTTCCTG
CGGCGCACGA GCCTCGACGA GCTGCCGCAG TTCGTCAACG TGCTGTTCGG CGACATGTCG
GTGGTCGGCC CGCGCCCGCA TGCGGTGGAG CATGACGCGC AGTACCGCAC GCTCGTCGAC
GGGTACATCC ACCGATACCG GATCAAGCCC GGCATCACCG GCTGGGCGCA AGTCAACGGG
CTGCGCGGCG CGACCGAACG GCTCGAAAGC ATGCAGTCCC GCGTCGAGTA CGACCTCTAC
TACCTGCGCA ACTGGTCGTT CGCGCTGGAC CTGCGAATCA TCGGTGCGAC GGTGTTGCGC
GGCTTCGGCC ATCAGAACGC GTACTGA
|
|---|
| Protein sequence | MNIGMKRKRE KGRATRAICA VDVLLIIVIA GITHRGSMWT LGAFRIEWIL IGVSALLAAF
MLRLAGIGLE GRTRPGTRYA LRTLALWLVV QGFVLLKMIA LTPVTMTLLA WFFYWTLGVA
IALAVFRVGL SVARHRSLHV PCTPSRVAIV GGGEWLERVA DSIDTAGASR YQFVGAYRTT
EHAATFGEGA FVATDLASFS ALARTERVDE IWIALPLDDD ATITRVINEF RHDFVELRLM
PDVSKHALFG SRVEDILGEP AISLAAPPLS RGARLAKAIF DRAFAAVVLV VLMPLLLVVA
AAIKLTSPGP VLFTQKRRGA DGQTFDIYKF RTMRVHAEPA GTVAQATRND PRVTKVGAFL
RRTSLDELPQ FVNVLFGDMS VVGPRPHAVE HDAQYRTLVD GYIHRYRIKP GITGWAQVNG
LRGATERLES MQSRVEYDLY YLRNWSFALD LRIIGATVLR GFGHQNAY
|
|---|
| |