| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_5058 |
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| Symbol | |
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| ID | 4313949 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008391 |
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| Strand | - |
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| Start bp | 2075820 |
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| End bp | 2077967 |
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| Gene Length | 2148 bp |
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| Protein Length | 715 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 638152901 |
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| Product | TonB-dependent siderophore receptor |
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| Protein accession | YP_776941 |
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| Protein GI | 115359803 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00424318 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGACGAG TATTGCACCC GGCACGACGC GCCGTACTGG CCGCCGTTGC GTGCCAGCCG
ATCATGGTTG TCGCGGCCTT CGCGCAGGAA AACACCGCCG CGCCGACGAG CGCGACGACC
GACATGTTGC CGGCCGTCTC GGTGAACGCG AGCGCGGTCC GTGATCCGGG CGAAGGCTAC
AACCCGACCA ACGCGGTCAG CGCCACCCGG ATCGACGCGC CGCTGCGCGA CATCCCGCAG
ACGGTGAACG TGGTCACGGC CGAAGTGATG CGTGATCAGC ACGCCAATTC CCTGCAGGAC
GTGTTGAAGA ACGTCGCGGG CGTCGGGTTC TCCACCGGCG ACGGTCAGCG CGACCAGGTC
ACCATTCGCG GCTTCTCCGC GATTGCCGAC CAGTTCGTCG ACGGCATTCG CGACGATGCG
CTCTATTTCC GCGATCTGTC GAACGTCGAT CGCGTAGAAG TCGTCAAGGG CCCTGCCGCC
GTTCTTTATG GCCGAGGTTC TTCAGGTGGA CTAATCAACC GTGTGACGAA AAAGCCCGGA
GTCGACGTCA CCAACCTGGG TGTCAGCTAC GGTTCGTGGG CCGACCGTCG GGTCGAAGCC
GATGTCGGCC GCGTGCTCGC GAACGGCGCG GCCGCGTTCC GGATCACCGG CGCGCACGAG
GAAGCCAAGA GCTATCGGTC GCAGCAGTTT CTGAATCGCA CGGCGGTCGC GCCGTCGTTC
GAATTCCGCA TCGCGCCGAA GACGACGGTA TTGCTGCAGG CCGACTACCT CGAAGATCGC
CGTGTGACGG ACTTCGGCAT CCCGGCCTAC AAGGGACGGC CGGTCGACGT GCCGGCATCC
GCCTATTACG GCGCGGCGAA CGCCGGCGAG GTCGACTATT CGCGATCGCG TGTCTATTCG
AGCACCGCGA CGATCAAGCA CGAGTTCAAC GAACAGTGGT CGATCCGCAA TGCCACTCGC
TACTATCACT ATTCGCTCGA CCGGAACAAC ACGCTCGTCG GCAGCGTCAA CGAAGCGAGC
CGGACGTTCA CGCTGAATCA CGGCAACGTC TATCGCGAGG AACACGGCTG GTTCAACCAG
ACCGATCTCA CGCAAAAGGC CACGCTGTTC GGCATGAAGC ACGAGTTGCT GTACGGGATG
GAAATCGGCC AGCAGAACAA GGATCTCGTC AATTATTCGG CTCCCGTCGC CGGCGCGAAC
GGCAAGCCGA TGAATTTCGA CCTGTTCGCG CCGGCGCTGC CGACGCTGCC GCTGCACACG
TCGACCACGC CGGCCACCAA CAACCTCGGC ATCTTCAAGA CGCTCGGGTT CTACACGCAG
GACCTGATCA GCTTCAACGA TCAGTGGAAG GCGCTGGTCG GCATCCGCTA CGACCGCTTC
GAGCAGGAGA CGCTCGACCG CCGGCCCAAA CAGCCGGGCC TGTCGCGTAC CGACACCGCA
TGGAGCCCGC GCCTGGGCCT GGTCTGGCAG CCGACCCGGA CGCAGTCGTA CTACGTGTCG
TGGAGCCGCT CGTTCCAGCC GTCGGGCGAG GCGTTCTCGC TCGCGGCCAA CAATGCGGAG
CTCGCGCCGG AAATCACGAC CAATACCGAG ATCGGTGCGA AGTACGACTG GCTCGGCGGC
AAGGCCACCA CGACGATCTC GGTGTTCCGG CTGGATCGCA GCAACATCAA GATCACCAAC
GGAGCCGGCA CGGCGCTGAT TCCGATCGGC GAGCAGCGGA CCGACGGCGT GGAACTCAGC
GGCGCAGCCG AGCTCAGCCA CGGCTGGCGC GTGCTGGCAG GCTACGCGTA CCTGGATGCC
ACCGTCACGA ATTCGACCGC TGCATTGCAG GGCAAGCGGG CCACGCTCAC GCCGCGTCAC
TCCGGCAATC TGTGGCTGAC CAAGAATCTC GGCAACGGCT TCGGCGTTGG CGGCGGCCTG
AACTTCGTCG GCGCGCGGAT GGCCGATCCG CAGAACACGG TGACCTTGCC GGGTTACGTG
ACGGCCGACA TGATGGCCTG GTACGCGCGC GGCCCGATGT CGCTCCAGTT GAACCTCTAC
AACCTGTTCA ACAAGGGCTA TATCGTCTCG GCACACGGCT CGAACGCGAA CCTCAACCTG
CCGGGGGCAC CGCGCAGCGT CATGGCGACG TTGCGATACG AGATGTAA
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| Protein sequence | MRRVLHPARR AVLAAVACQP IMVVAAFAQE NTAAPTSATT DMLPAVSVNA SAVRDPGEGY
NPTNAVSATR IDAPLRDIPQ TVNVVTAEVM RDQHANSLQD VLKNVAGVGF STGDGQRDQV
TIRGFSAIAD QFVDGIRDDA LYFRDLSNVD RVEVVKGPAA VLYGRGSSGG LINRVTKKPG
VDVTNLGVSY GSWADRRVEA DVGRVLANGA AAFRITGAHE EAKSYRSQQF LNRTAVAPSF
EFRIAPKTTV LLQADYLEDR RVTDFGIPAY KGRPVDVPAS AYYGAANAGE VDYSRSRVYS
STATIKHEFN EQWSIRNATR YYHYSLDRNN TLVGSVNEAS RTFTLNHGNV YREEHGWFNQ
TDLTQKATLF GMKHELLYGM EIGQQNKDLV NYSAPVAGAN GKPMNFDLFA PALPTLPLHT
STTPATNNLG IFKTLGFYTQ DLISFNDQWK ALVGIRYDRF EQETLDRRPK QPGLSRTDTA
WSPRLGLVWQ PTRTQSYYVS WSRSFQPSGE AFSLAANNAE LAPEITTNTE IGAKYDWLGG
KATTTISVFR LDRSNIKITN GAGTALIPIG EQRTDGVELS GAAELSHGWR VLAGYAYLDA
TVTNSTAALQ GKRATLTPRH SGNLWLTKNL GNGFGVGGGL NFVGARMADP QNTVTLPGYV
TADMMAWYAR GPMSLQLNLY NLFNKGYIVS AHGSNANLNL PGAPRSVMAT LRYEM
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