Gene Bamb_4932 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_4932 
Symbol 
ID4313823 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008391 
Strand
Start bp1942903 
End bp1944162 
Gene Length1260 bp 
Protein Length419 aa 
Translation table11 
GC content66% 
IMG OID638152775 
Productextracellular solute-binding protein 
Protein accessionYP_776815 
Protein GI115359677 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0556288 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACACATC GCCCCCTTCG CGTCGCCGCC CGGCTTGCGA CCGCCGCCGC CATCGCGTTC 
GCTTCGCTCG GCGCCGCGGC GCCGGCCAGC GCGGGCACGC TGACGATCAA CATCGCGTTC
AAGGGCGCCA GCCAGCGCGC GGTCTGGCAG TCGACGATCG AGGCGTTCCA CAAGGCCCAT
CCCGACATCG ACGTGAAGCC CACCTTCGTC GACGAGGAAG CGTACAAGGT GCAGCTCCCC
GCGTGGCTCA CGACCGTCGC GCCCGACGTG GTCAACTGGC ACGCGGGCGA GCGCATGGCG
TACTACGCGA AGCGCGGGCT GTTCGAGGAC CTGAGCGGCG ACTGGGCGAA GAACGGCTGG
GACGCGATGT ACGCGTCGAC GCGCAGCGCA TCGTCGTACA ACGGCAAGCA ATACGCGGCG
CCGACCGTCT ATTACTCGTG GGGGCTGTTC TACCGCAAGG ACCTGTTCCG CAAGGTCGGC
ATCGCCGACG AGCCCAAGAC CTGGGACCAG TTTCTCGATG CGTGCAAGAA GCTGAAGGCG
GCCGGCATCA CGCCGATCGC GGTCGGCGGC CGCGACGCGT GGACGCTCGC CGGCTGGTTC
GACTATCTCG ACCTGCGCCT GAACGGCAAC GCGTTCCACC AGCAGCTGAT GGCCGGCGAC
GTGCCGTACA CGGACCCGCG CGTGAAGAAG GTCTATACGA CGTGGAAATC GCTGATCGAC
TCGGGCTACT TCATCGACAA CGCGCTGTCC TACGATCTCG ACGGCGCGCA GCCGTTCCTG
TTCCAGGGCA AGGCCGCGAT GATGCTGATG GGCACCTTCA TCGCGGCCGG CTTTCCGCCG
AACGTGAAGC AGGAAATGGG CTATTACCGG TTCCCGATCA TCGACCCGAA GGTGCCGACC
GCCGAGGACG GCCCGGTCGA ATCGCTGCAC ATCCCGACCA AGGCGAAGAA CAAGGCGGAC
GCGCATACGT TCCTCGCGTT CGTCGAAACG CCCGAGATGG GTGCGAAGCT CGCGGAAGGG
CTCGGCTCGC TGTCGGCCAA CAGCAAGTCG CCGGAGCCGG CCGATCCGAT TTCGCGGATC
GGCTTCCGGA TCCTCGCCGA CACCAAGGGC GGCGTCGCGC AGTTCTATGA CCGCGACATG
ACCAAGGAAA TGGCCGACGA AGGGATGAAG GGGATGCAGC AGTTCCTCGC GAATCCCGCG
CAGCTCGATA CCGTGCTCGC GCAGCTCGAA CAGACCCGCA AGCGGATCTA CAAGAAGTAA
 
Protein sequence
MTHRPLRVAA RLATAAAIAF ASLGAAAPAS AGTLTINIAF KGASQRAVWQ STIEAFHKAH 
PDIDVKPTFV DEEAYKVQLP AWLTTVAPDV VNWHAGERMA YYAKRGLFED LSGDWAKNGW
DAMYASTRSA SSYNGKQYAA PTVYYSWGLF YRKDLFRKVG IADEPKTWDQ FLDACKKLKA
AGITPIAVGG RDAWTLAGWF DYLDLRLNGN AFHQQLMAGD VPYTDPRVKK VYTTWKSLID
SGYFIDNALS YDLDGAQPFL FQGKAAMMLM GTFIAAGFPP NVKQEMGYYR FPIIDPKVPT
AEDGPVESLH IPTKAKNKAD AHTFLAFVET PEMGAKLAEG LGSLSANSKS PEPADPISRI
GFRILADTKG GVAQFYDRDM TKEMADEGMK GMQQFLANPA QLDTVLAQLE QTRKRIYKK