Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_4932 |
Symbol | |
ID | 4313823 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008391 |
Strand | + |
Start bp | 1942903 |
End bp | 1944162 |
Gene Length | 1260 bp |
Protein Length | 419 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 638152775 |
Product | extracellular solute-binding protein |
Protein accession | YP_776815 |
Protein GI | 115359677 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0556288 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACACATC GCCCCCTTCG CGTCGCCGCC CGGCTTGCGA CCGCCGCCGC CATCGCGTTC GCTTCGCTCG GCGCCGCGGC GCCGGCCAGC GCGGGCACGC TGACGATCAA CATCGCGTTC AAGGGCGCCA GCCAGCGCGC GGTCTGGCAG TCGACGATCG AGGCGTTCCA CAAGGCCCAT CCCGACATCG ACGTGAAGCC CACCTTCGTC GACGAGGAAG CGTACAAGGT GCAGCTCCCC GCGTGGCTCA CGACCGTCGC GCCCGACGTG GTCAACTGGC ACGCGGGCGA GCGCATGGCG TACTACGCGA AGCGCGGGCT GTTCGAGGAC CTGAGCGGCG ACTGGGCGAA GAACGGCTGG GACGCGATGT ACGCGTCGAC GCGCAGCGCA TCGTCGTACA ACGGCAAGCA ATACGCGGCG CCGACCGTCT ATTACTCGTG GGGGCTGTTC TACCGCAAGG ACCTGTTCCG CAAGGTCGGC ATCGCCGACG AGCCCAAGAC CTGGGACCAG TTTCTCGATG CGTGCAAGAA GCTGAAGGCG GCCGGCATCA CGCCGATCGC GGTCGGCGGC CGCGACGCGT GGACGCTCGC CGGCTGGTTC GACTATCTCG ACCTGCGCCT GAACGGCAAC GCGTTCCACC AGCAGCTGAT GGCCGGCGAC GTGCCGTACA CGGACCCGCG CGTGAAGAAG GTCTATACGA CGTGGAAATC GCTGATCGAC TCGGGCTACT TCATCGACAA CGCGCTGTCC TACGATCTCG ACGGCGCGCA GCCGTTCCTG TTCCAGGGCA AGGCCGCGAT GATGCTGATG GGCACCTTCA TCGCGGCCGG CTTTCCGCCG AACGTGAAGC AGGAAATGGG CTATTACCGG TTCCCGATCA TCGACCCGAA GGTGCCGACC GCCGAGGACG GCCCGGTCGA ATCGCTGCAC ATCCCGACCA AGGCGAAGAA CAAGGCGGAC GCGCATACGT TCCTCGCGTT CGTCGAAACG CCCGAGATGG GTGCGAAGCT CGCGGAAGGG CTCGGCTCGC TGTCGGCCAA CAGCAAGTCG CCGGAGCCGG CCGATCCGAT TTCGCGGATC GGCTTCCGGA TCCTCGCCGA CACCAAGGGC GGCGTCGCGC AGTTCTATGA CCGCGACATG ACCAAGGAAA TGGCCGACGA AGGGATGAAG GGGATGCAGC AGTTCCTCGC GAATCCCGCG CAGCTCGATA CCGTGCTCGC GCAGCTCGAA CAGACCCGCA AGCGGATCTA CAAGAAGTAA
|
Protein sequence | MTHRPLRVAA RLATAAAIAF ASLGAAAPAS AGTLTINIAF KGASQRAVWQ STIEAFHKAH PDIDVKPTFV DEEAYKVQLP AWLTTVAPDV VNWHAGERMA YYAKRGLFED LSGDWAKNGW DAMYASTRSA SSYNGKQYAA PTVYYSWGLF YRKDLFRKVG IADEPKTWDQ FLDACKKLKA AGITPIAVGG RDAWTLAGWF DYLDLRLNGN AFHQQLMAGD VPYTDPRVKK VYTTWKSLID SGYFIDNALS YDLDGAQPFL FQGKAAMMLM GTFIAAGFPP NVKQEMGYYR FPIIDPKVPT AEDGPVESLH IPTKAKNKAD AHTFLAFVET PEMGAKLAEG LGSLSANSKS PEPADPISRI GFRILADTKG GVAQFYDRDM TKEMADEGMK GMQQFLANPA QLDTVLAQLE QTRKRIYKK
|
| |