| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_4928 |
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| Symbol | |
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| ID | 4313819 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008391 |
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| Strand | + |
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| Start bp | 1936235 |
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| End bp | 1938340 |
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| Gene Length | 2106 bp |
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| Protein Length | 701 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 638152771 |
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| Product | TonB-dependent siderophore receptor |
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| Protein accession | YP_776811 |
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| Protein GI | 115359673 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.92165 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0613128 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAGGA AGAACTGGGC GGCCGCACCG ATGGCCATCG TCGTCGGCAC GGCCGGCCTG
AGCGCCGCCG AGGCTCAGGA ACTGTCGCTG CCCGCGATCG AAGTGTCCGG GCAGCGCACG
ACGGCGCCGT TTCGCGCGCC GGAATCGACG AGCGCGACGC GCACCGAGAC GGACGTGATG
GAGATTCCGT TCGCGGTCAG CAGCGTCGAC AAGAAGCTGA TCCAGACGGT AGCGGCCACA
CGCGGCGAAG ACCTGTACGA CTGGGTCGCC GGCGTCGCGC GGCAAAATAA CTTCGGCGGG
CTGTGGGACA ACTACGCGGT GCGCGGTTTT GCCGGCGACG GCAACACGTC CGGCACCGAC
TACCTCGTCA ACGGCTTCTC GTGGAATCGC GGCATCAGCG TGCCGCGCGA CACCGCCACG
CTCGAGCGCA TGGAAGTCCT CAAGGGGCCC GCGTCCGCGC TGTACGGCCG CGGCGACCCC
GGCGGGCTCA TCAGCTACAC GACGAAGCAG CCGCAGTTCG CGCGCGCGAA CACGATCGGC
GTGTCGGCCG GCAGCTACGG CGCGCTGCGC GAGACGCTCG ATTCAACCGG CCCCGTCACG
AAGTCGCTCG CGTACCGCTT CATCGCGATG AACGAGGACA ACGGCAGCTT CCGCGATACC
GTGTCGAGCA AGCGCTACCT GTTCGCGCCG TCGTTCACGT GGGACATCGG CGCGGACACG
ACGCTCCACT ACGAATTCGA GACCGCCCGC CAGCGCGCGC CGCTCGATCG CGGCGTGGTC
GCGGTCAACG GGCAGCTCGG CGCGGTGCCG GCGTCGAGGT TCATGGGCGA GCCGCGCGAC
GGCGACTACG ACGTGCGCAA CTCGGGCCAC CAGTTCACGC TCGAACATCG CTTCAATGCC
GACTGGTCGG TCAACGCCGG CTTCGCGCAG CGCGACACCG ACCTGTCCGG CCGCTCGTCC
GAAGCGTTCG CGCTGCAGCC GGACGGGCGT ACGCTATGGC GCCGCTACCG GCAGGTCGCG
TTTCACTCGA ACGACGTGCA AGGGCGCGTC GAGGTGGCCG GCAAGGCCCG CACGGCCGGC
ATCGGCCATA CGTTCGTGAT GGGCGTCGAC GCGTACCGCT TCAACTACGA CCAGTTCGTG
TCGCGCTCGA CGCCGACGGC CGCGGCGCCG TATGCGATCG ACATCTTCGA TCCGGTCTAC
GGCCAGCCGG CGCCCGTGCC GCGCACCGCG ACGAACCTGC TCGAGCGCGA CGACGGCCAG
GGCCTGTACG CGCAGGACAC GCTCGCGTTC GGGCCGCACT GGAAAGTGCT CGCCGGGCTG
CGCTGGGACC GCTTTCACCA GTCGGTCGAG AACCGCCTGA AGGGCGTGAC GACGACCCAG
CTGCAAACGG CGCTGAGCCC GCGGCTCGGC ATCGTGTACG AGGCCAGCCC CGCGCTGTCG
CTCTACGCGA ACACCGCGTA TTCGTTCCGG CCGAACAACG GCGCCGACGT GAACGGCCGC
GCGTTCGATC CGGAGAAGGG GCACGGCTAC GAAGCCGGCG TGAAATGGGC CGGCACGCGC
TGGCTCGCAA CCGTCGCCGC GTTCTACGTG AACAAGCGCA ACGTGCTGAC CGCCGATCCC
GCGAATGCCG GGTTCTCGCG TGCAGCCGGC GAAGTACGCA GCCGCGGCGT CGAATTCGAA
TGGAACGGCG AACTCGGCCA CGGGTTGCGC GGCATCGTCA ACCTCGCGTA CGTCGATGCG
CAGGTCACGC ACGACAACGT GCTGACGCCG GGCGCACGCC TCGTCGACAT TCCGCGGCTG
AGCGGGAGCG CGCTGCTGAT GTACGAAACC GCGCTGGCGC TCGTCGACAA GGCCGGCGCG
GGCGCGGGCG TGATCTACGT CGGGCGCCGC GCGGGCAATA CCGCGAACAC GCAGGATGGC
TTCGATCTCC CCGCTTATGC GACCGTGCAG CTCAACGGCT ACGTGCAGGT CAACAAGCAT
CTGCGCGCGT CGGTCGTGCT GAACAACCTG TTCAACCGCA CGTACTACGT CAGCTCGTAC
AACAGCCTGT GGGTCACGCC GGGCGCGCCG CGCAGCCTGT TCGCGTCGCT CGCGTATTCG
TTCTAG
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| Protein sequence | MSRKNWAAAP MAIVVGTAGL SAAEAQELSL PAIEVSGQRT TAPFRAPEST SATRTETDVM
EIPFAVSSVD KKLIQTVAAT RGEDLYDWVA GVARQNNFGG LWDNYAVRGF AGDGNTSGTD
YLVNGFSWNR GISVPRDTAT LERMEVLKGP ASALYGRGDP GGLISYTTKQ PQFARANTIG
VSAGSYGALR ETLDSTGPVT KSLAYRFIAM NEDNGSFRDT VSSKRYLFAP SFTWDIGADT
TLHYEFETAR QRAPLDRGVV AVNGQLGAVP ASRFMGEPRD GDYDVRNSGH QFTLEHRFNA
DWSVNAGFAQ RDTDLSGRSS EAFALQPDGR TLWRRYRQVA FHSNDVQGRV EVAGKARTAG
IGHTFVMGVD AYRFNYDQFV SRSTPTAAAP YAIDIFDPVY GQPAPVPRTA TNLLERDDGQ
GLYAQDTLAF GPHWKVLAGL RWDRFHQSVE NRLKGVTTTQ LQTALSPRLG IVYEASPALS
LYANTAYSFR PNNGADVNGR AFDPEKGHGY EAGVKWAGTR WLATVAAFYV NKRNVLTADP
ANAGFSRAAG EVRSRGVEFE WNGELGHGLR GIVNLAYVDA QVTHDNVLTP GARLVDIPRL
SGSALLMYET ALALVDKAGA GAGVIYVGRR AGNTANTQDG FDLPAYATVQ LNGYVQVNKH
LRASVVLNNL FNRTYYVSSY NSLWVTPGAP RSLFASLAYS F
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