| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_4699 |
|---|
| Symbol | |
|---|
| ID | 4313591 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | - |
|---|
| Start bp | 1688134 |
|---|
| End bp | 1689351 |
|---|
| Gene Length | 1218 bp |
|---|
| Protein Length | 405 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638152543 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_776583 |
|---|
| Protein GI | 115359445 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCATCC TACGCACCTC CCGTTCCCGA ATCGCCACCG CGGCGATCGT GACGCTCGCC
GTCGTCGGCC TCGGCACGTT CGGCGCGATG CGCGTGAGCG CGAACGCGCC CGAAAAGGCG
GCGGCACCGC TGCCCGAAGT CGACGTCGCG ACCGTCGTGC CGCAGACCGT CACCGACTGG
CAAAGCTATT CGGGCCGCCT CGAAGCGGTC GAGAAAGTCG ACGTGCGCCC GCAGGTGTCG
GGCACGATCG TCGCGGTGAA CTTCAAGGAC GGCGCGCTCG TGAAGAAAGG CGACGTACTG
TTCGTGATCG ATCCGCGCCC GTACCAGGCG GAAGTCGACC GTGCCGCGGC ACAGCTCGCC
GGCGCGCAGG CACGCAATGG CTACGCGCAG AGCGACTGGC AGCGCGCGCA GCGGCTGATC
GGCGACAACG CGATCGCCAA GCGCGACTAC GACGAGAAGC AGAACGCCGC GCGCGAGGCG
AGCGCGAACC TGAAGGCCGC CGAAGCCGCG CTGGAAACGG CACGCATCAA CCTCGGCTAT
ACGCGGATCA CGGCGCCGGT CTCGGGCCGC GTGTCGCGCG CGGAAATCAC GCTCGGCAAC
GTCGTGTCGG CCGGTGCGTC GGCCGCGCCG CTGACGACGC TGGTGTCGGT GTCGCCGATC
TACGCATCGT TCGACGCGGA CGAGCAGACC TACCTGCAAT ACATCAACGG CGCGCGCAAC
GGCCGCAAGG TGCCGGTCGA GCTCGGTCTC GCGAACGAAA CCGGCTACTC GCGCAGCGGC
GAAATCGATT CGGTCGACAA CCGGCTCGAC ACGTCGTCCG GGACGATCCG CGTGCGTGCA
CGCTTCGACA ATGCGGACGG TGCGCTCGTG CCCGGCCTCT ACGCGCGCGT GAAGGTGGGC
GGCAGCGCGC CGCACCAGGC ACTGCTCGTC GACGACGCGG CGATCAACAC GGACCAGGAC
AAGAAGTTCG TGTTCGTCGT CGACCAGCAG GGCCGCGTGT CGTATCGCGA AGTGCAGCAG
GGGATGCAGC ACGGCAACCG GCGCGTCATC GTGAGCGGAC TTTCCGCCGG CGACCGCGTG
ATCGTGAACG GCACGCAGCG CGTACGACCC GGCGAGCAGG TGAAGCCGCA CATGGTCCCG
ATGACGGGCG GCGATGCGCC GTCCGCGCCG CTCGCGAGCA CTGCGAAGCC GGCCGCACCG
GCGAAGGCGG ATTCGTAA
|
|---|
| Protein sequence | MAILRTSRSR IATAAIVTLA VVGLGTFGAM RVSANAPEKA AAPLPEVDVA TVVPQTVTDW
QSYSGRLEAV EKVDVRPQVS GTIVAVNFKD GALVKKGDVL FVIDPRPYQA EVDRAAAQLA
GAQARNGYAQ SDWQRAQRLI GDNAIAKRDY DEKQNAAREA SANLKAAEAA LETARINLGY
TRITAPVSGR VSRAEITLGN VVSAGASAAP LTTLVSVSPI YASFDADEQT YLQYINGARN
GRKVPVELGL ANETGYSRSG EIDSVDNRLD TSSGTIRVRA RFDNADGALV PGLYARVKVG
GSAPHQALLV DDAAINTDQD KKFVFVVDQQ GRVSYREVQQ GMQHGNRRVI VSGLSAGDRV
IVNGTQRVRP GEQVKPHMVP MTGGDAPSAP LASTAKPAAP AKADS
|
|---|
| |