Gene Bamb_4661 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_4661 
Symbol 
ID4313553 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008391 
Strand
Start bp1644026 
End bp1645114 
Gene Length1089 bp 
Protein Length362 aa 
Translation table11 
GC content65% 
IMG OID638152505 
ProductABC transporter periplasmic-binding protein 
Protein accessionYP_776545 
Protein GI115359407 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG4143] ABC-type thiamine transport system, periplasmic component 
TIGRFAM ID[TIGR01254] ABC transporter periplasmic binding protein, thiB subfamily
[TIGR03227] 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate binding protein 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.762259 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.137959 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACACTGC AGAATTCCTC GCGCGCCGCT GCCGGCGCGT TCCGCAAGCT CGCGCTGGCT 
GCCGGCGTCG CCGGCCTGAT GGGCGTCGCC TTGCCCGCGC ATGCGGCGAA CGCGGTCGTG
CTGTATACGG CGGACGGCCT CGAGAACCTC TATCGCGATG TGCTGCCGGC CTTCGAGAAG
AAGGAAGGCG TCAAGGTCAA CATCGTGACG GCGGGCAGCG GCGAGGTGGT CAACCGCGCG
AACATCGAGA AGAACTCGCC GAAGGCGGAC GTGATCGTCA CGCTGCCGCC GTTCATTCAG
CAAGCCGGCC AGATGGGCCT GCTGCAGCCG TACCAGAGCG TGAACTACAA GAACGTGCCG
GCGATCGCGA AGGCGGAAGA CGGTACGTGG GCGACGTTCG TGAACAACTA CTTCTCGTTC
GCGATCAACC CGGACGTCGT GAAGAACCAG CCGAAGACGT TCGCCGACCT GCTGTCGCCG
AGCTATGCCG GCAAGGTGGC GTACTCGAAC CCGGCGACCG CCGGCGACGG AATGGCCGTG
CTGATCCTGA CGACCTCGCT GATGGGCGAG GACAAGGCGT TCGACTACCT CGCGAAACTG
TCGCAAAGCG TGAAGTTCCA CACCAAGGGC ACCGGCTACC TGAACGTGCT GCTGTCGCGC
AACGAGATCA GCGTCGCGAA CGGCGACCTG CAGATGGACC TCGACGACGC CGAGCACGGC
GCGCTGTCCG TCAAGCCGAT CTTCCTGGCC GCCAAGGACG GCGACCAGCC GACCACGTTC
CAGCTGCCGT ACGGCATCGG TCTGATCAAG AGCGGCCCGA ACCAGGACGT CGGCAAGAAG
CTGATCGACT ACCTGATGTC GACGGAAGTG CAGTCGAAGG TGCCGGACAT GTACGGCATC
CCGGGCCGCA CCGACGTTCC GCTGGCCGGC AAGAACGGCG AAGCGGTGAA GAAGGCGATC
GCGGGCGTGA AACTGATCCC GGTCGACTGG AGCCAGGTGA TGGCGAAGAA GCCGGTGTGG
ATCGAGCGCT GGAAGAAGGA CGTGATCGGC AGCTCGGGCA AGCAGCTCGA CGTCGTCAAG
CCGAAGTGA
 
Protein sequence
MTLQNSSRAA AGAFRKLALA AGVAGLMGVA LPAHAANAVV LYTADGLENL YRDVLPAFEK 
KEGVKVNIVT AGSGEVVNRA NIEKNSPKAD VIVTLPPFIQ QAGQMGLLQP YQSVNYKNVP
AIAKAEDGTW ATFVNNYFSF AINPDVVKNQ PKTFADLLSP SYAGKVAYSN PATAGDGMAV
LILTTSLMGE DKAFDYLAKL SQSVKFHTKG TGYLNVLLSR NEISVANGDL QMDLDDAEHG
ALSVKPIFLA AKDGDQPTTF QLPYGIGLIK SGPNQDVGKK LIDYLMSTEV QSKVPDMYGI
PGRTDVPLAG KNGEAVKKAI AGVKLIPVDW SQVMAKKPVW IERWKKDVIG SSGKQLDVVK
PK