Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_4564 |
Symbol | |
ID | 4313456 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008391 |
Strand | - |
Start bp | 1515317 |
End bp | 1516264 |
Gene Length | 948 bp |
Protein Length | 315 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 638152403 |
Product | substrate-binding region of ABC-type glycine betaine transport system |
Protein accession | YP_776448 |
Protein GI | 115359310 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components |
TIGRFAM ID | [TIGR03414] choline ABC transporter, periplasmic binding protein |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.228713 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGCGCC TATTGATCGC AACGGTATGC GGGATCGGGA TCGCCGCGCC GATGTCGGCG GTGTATGCGG CCGACCCGCC CGTGTGCAAG AACGTGCGCT TCGCGGACGT CGGCTGGTCC GACATCGCGG CCACCACCGG CCTCGCGTCG ACGATGCTGC AGGGGCTCGG CTACGCGCCG ACCAAGACGA TCGCGTCGGT GCCGATCACG TTCGCCGGCA TCAAGAGCAA GCAGATCGAC GTGTTCCTCG GCTACTGGTC GCCGACGATG GACCCGATCA TCCAGCCGTT CACGAAGGCC GGCACGATCA AGGTGCTCGC CACGCCCAAC CTGACCGGTG CGAAATACAC GCTCGCGGTG CCCGACTACG TGTATCAGGG CGGCCTGAAG TCGTTCGCCG ACATCCAGAA GTACGCGGAC AAGCTCAACG GCAAGATCTA CGGGATCGAG CCGGGCAACG ACGGCAATGC GCTCATCAAG AAGATGATCG ACACCAATCA GTTTGGCCTC GGCAAGTTCA AGCTGGTCGA GTCGAGCGAA GCCGGCATGC TGATCGAGGT GAATCGCGCG GCCCGCGACA AACAGTGGAT CGTGTTTCTG GGATGGGAAC CGCATCCGAT GAACGTGCAG ATGAAGATCG ATTACCTGAC CGGCGGCGAC GACGTGTTCG GCCCGAACTA CGGTGAGGCG AAGGTGCTGA CGGCCACGCC GCCCGACTAC GCGCAGCGCT GCCCGAACGT CGCGAAGTTC GTGTCGAACC TGCAGTTCAC GACGGCGATC GAGAACCACG TGATGGTGCC GATCATGAAC AAGGAAGACC CGAACAAGGC CGCCGCCGCG TGGCTGAAGG CGAACCCGCA ATCGCTCGAG AAGTGGCTGG CCGGCGTGAC GACGCTCGAC GGCAAGCCGG GGCTGCCGGC GGTGAAGGCT TATCTCGGCG TGCATTGA
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Protein sequence | MKRLLIATVC GIGIAAPMSA VYAADPPVCK NVRFADVGWS DIAATTGLAS TMLQGLGYAP TKTIASVPIT FAGIKSKQID VFLGYWSPTM DPIIQPFTKA GTIKVLATPN LTGAKYTLAV PDYVYQGGLK SFADIQKYAD KLNGKIYGIE PGNDGNALIK KMIDTNQFGL GKFKLVESSE AGMLIEVNRA ARDKQWIVFL GWEPHPMNVQ MKIDYLTGGD DVFGPNYGEA KVLTATPPDY AQRCPNVAKF VSNLQFTTAI ENHVMVPIMN KEDPNKAAAA WLKANPQSLE KWLAGVTTLD GKPGLPAVKA YLGVH
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