Gene Bamb_4503 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_4503 
Symbol 
ID4313395 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008391 
Strand
Start bp1453617 
End bp1454807 
Gene Length1191 bp 
Protein Length396 aa 
Translation table11 
GC content72% 
IMG OID638152342 
Productsecretion protein HlyD family protein 
Protein accessionYP_776387 
Protein GI115359249 
COG category[V] Defense mechanisms 
COG ID[COG1566] Multidrug resistance efflux pump 
TIGRFAM ID[TIGR00998] efflux pump membrane protein (multidrug resistance protein A) 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACCACG ACAACCTTCA TACCGCCGCG CAGCCGGCCG CACTGAACGA CCCGGCACTC 
GACGCGCGCC GGGCGACCCG CCGCAAGCGC TTCACGCTGT TCTTCGCGGT CGTGCTGCTG
GCCGCGCTCG TGTGGATCGC GTTCTGGCTG CTGCACGACC GCTATGTCGA GGACACCGAC
GACGCATACG TTGCGGGCAG CATCGTGCAG GTCGCCGCGC AGATCCCGGG CGCGGTGACC
GACGTGCTGG TCGCCGATAC GCAGCCCGTG CGCGCCGGGC AGCCGCTCGT GCGGCTCGAC
GACACCGAAG CGTCCGTCGC CTTCGCGCAG GCGAAGGCGC AGCTCGTGCA GGCCGTGCGG
CAGGTCGCGA ACGCGAAGAT CTCGAACACG ATGTACGTGG AAGCCGTGAA CGCGCGCCAG
GCCGACCTGT CGCTCGCGCA GCGCGCGCTC GCCGCGCGTT CGGGCGCATC GGTCGAGATC
GTCGCGCCGG AGGAACTGGC GCGCGCCCAC GCGGCGGTCG CCGGCGCCCA GGCAAACCTC
GCGGCCGCGC AGGCGCAGCT CGAAGCGGCG CGGGCGCTCG GCAGCAAGCT GCCGGTCGAC
GAAAGCCCGG CCGTCGTGCA GGCGGCCGCG CAGTTCCGGC TCGCGTACCG GAACCTGAAG
CGCACGACGA TCGTCGCGCC GGTCGACGGC ACGGTCGGCC AGCGTTCGGT GCAGGTTGGC
CAGCAGGTCG GGCCCGGCGT GCCGCTGATG TCGATCGTGC AGCTGAACCG GCTGTGGATC
GAAGCGAACT TCAAGGAAGG GCAGATTCGC CACATGCGCA TCGGCCAGCC GGTCGACGTG
GTGTCGGACC TGTACGGCTC GCGGGTCGTC TATCGCGGCC GCGTGCAGGG CTTCTCGGCG
GGCACCGGCA GCGCGTTCTC GATGCTGCCG TCGCAGAACG CGGCCGGCAA CTGGATCAAG
GTCGTGCAGC GGGTGCCGGT CGTGATCGCG ATCGATCCCC GCGACCTGGC CGCGCATCCG
CTCAGGGTCG GGTTGTCGAT GCGCGCGACC GTCGATACGC GCAACCGCGA CGGCCACGCG
CTCGACAGCG AGCCGCCGAC GCCGGCCGTC AGCACGCGCG TGCACGACGG CGTCGCGAGC
GACGCGCAAG CGGCTGCCAC CGCGATCATC CGCGAGAACC AGGGCGGATA A
 
Protein sequence
MHHDNLHTAA QPAALNDPAL DARRATRRKR FTLFFAVVLL AALVWIAFWL LHDRYVEDTD 
DAYVAGSIVQ VAAQIPGAVT DVLVADTQPV RAGQPLVRLD DTEASVAFAQ AKAQLVQAVR
QVANAKISNT MYVEAVNARQ ADLSLAQRAL AARSGASVEI VAPEELARAH AAVAGAQANL
AAAQAQLEAA RALGSKLPVD ESPAVVQAAA QFRLAYRNLK RTTIVAPVDG TVGQRSVQVG
QQVGPGVPLM SIVQLNRLWI EANFKEGQIR HMRIGQPVDV VSDLYGSRVV YRGRVQGFSA
GTGSAFSMLP SQNAAGNWIK VVQRVPVVIA IDPRDLAAHP LRVGLSMRAT VDTRNRDGHA
LDSEPPTPAV STRVHDGVAS DAQAAATAII RENQGG