Gene Bamb_4480 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_4480 
Symbol 
ID4313372 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008391 
Strand
Start bp1421686 
End bp1423890 
Gene Length2205 bp 
Protein Length734 aa 
Translation table11 
GC content66% 
IMG OID638152319 
ProductTonB-dependent siderophore receptor 
Protein accessionYP_776364 
Protein GI115359226 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG4774] Outer membrane receptor for monomeric catechols 
TIGRFAM ID[TIGR01783] TonB-dependent siderophore receptor 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.938344 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGAACA GGACCCCGTT CGCGAGCGCG CTCGCGCTGG CCTTTGCTTT GCCTATCGCT 
TCGCCTGCAC TCGCTCAGAG CACGAGCGCC GAACCGTCGC CGGCCGCCGC CGCGAAACCG
GGCGATGCGC CGCCGGCTGC CGCCGCCGCG CGCGAAACGC TGCCGACTAT CAGCGTGTCG
GGGCAGGCCG TGCAACAGGA CTTCCAGGCC GAACGTTCGA CCGTCGGCGC GAAAACCCCG
ACCGCGTTGC GCGACATTCC GCAGTCGGTC ACGGTGATCA ACAAGGCGCT GATGGAATCG
CAAGGGCTCA CGTCGTTCCA GGACGCGCTG CGCAATGCGC CGGGCATCAC GATCGGCGGC
GCGGAAGGCG GGCAGATCGG CAACAACATC AACCTGCGCG GCTTCACCGC GCAGAACGAC
ATCTATCTCG ACGGCTTTCG CGACCGCAAC CAGTATTACC GCGACACGTT CGACCTCGAT
TCCGTCGAGG TGCTGTACGG CCCGTCGTCG ATGCTGTTCG GACGCGGTTC GACGGGCGGC
GTGATCAACC AGGTGTCGAA GAAGGCGAAC CTGAAGCCGT CGGCCGAGGT GTCGACGACG
ATCGGCACCA ACGACCGCTA CCGCACGAGC GTCGACCTGA ACCGGCCGCT GGGCGCGACG
TCGGCGTTCC GCATCAACGC GTTCGGCCAG TCGCTCGGCT CGACGCGCGA CGTGATGAAG
AACAAGGACT ACGGGATCGC ACCGGAGCTG CGCTTCGGGA TCGGCACGCC GACCGAGGTG
ACGCTGTCCG CGCTGATCCA GCACAACTAC GACATGCCCG ACTACGGCGT GCTCGCGGTC
AACGGCCATC CGGCGCCGGT GCCGAAGAAC ACCTTCTATG GCCTCACCGA CGATCGCACG
ATCCAGGACG TGCAGACCGT GTCCGCACGC ATCGATCATC GGGTCAACGA TGCGCTGACG
ATCAGCAACC GCACGTCGTT CTCGCACTCG ATGACCGATG CGCGCGAGAC GGCCGCGAAC
GCGGTGCTGA CCGGGCCGCT GTCGTCGAGC ACCGCGCTGA CGAACGGTAA CTACACGTCG
TTGCCGATGT CCGCGCTGTA CGTGAGGCTC GCGAGCCACG ACCGCGTGAT CGAAAACCAT
TCGGTCGACA ACGACACGAT GGCGCATTTC AAGTTCGACA CGGGTTTCGT GAAGCACGAC
CTGATCGGCG GTGTCGAGGT CGGCCACGAC AGTTACACGA ACCAGGCGTA CACGCGCAGC
GGTCTGCCGA TCCTGTCGCT GATCAACCCG GCCTACCTGG CGTCGACGCC GACCAACGCG
ACGCAGACGC CGGCCAACCA CGCCGAATCG GGCGCGACCA CGCTCGCGGC GTACCTGAAC
GACACGGTGT CGATCGGCCG CGACTGGAAA TTCGTGGGCG GGCTGCGCTG GGATCGCTTC
CAGGCGCATC TCGCGAACAC GGTGAGCGCG CCCCGCTACG CATCGCAGAC CAACTATTTC
ACGAGCGTGC GGGCCGGCGT GATCTACCAG CCGACCGAAT CGCAGTCGTA CTACTTCTCG
TACGGCACGT CGTTCAACCC GTCGCTCGAG ACGCTGACGG TCACGAACAA CACGCAGAAC
CTGTCGCCCG AGCACACGAA GTCGTACGAG GTCGGCGGCA AGTGGGATCT GCTCAACGAC
AACCTGTCGG TCACGTCGGC GCTGTTCCAG CAGGAGAAGA GTAACGCGCG CACGCAGACG
TCGACGGGTG AATACCTGCT CGAAGGCGAC GTTCGCGTGC GCGGCTTCCA GGCGAGCGTG
ACGGGCCACA TCACGCCGAA GTGGCAGGTG TTCGGCAGCT ACACGTACAT GAACGGCGTG
ATCCTGGGCG CGCGCGACGG CACGCAGGGC AAGACGCTCG CGAATACGCC GCGCAACACG
TTCACGCTGT GGACCACGTA TGCGTTCACG CCGCACTGGG AGATCGGCGG CGGTCCGACG
TACATGTCGG GCCGCTACGC GGCGAACACG GACTACGTGC AGGTGGGCGG CTACACGCGC
TGGGATGCGA CGGCCGCGTA TCACGCGAAG CAGTGGGACC TGCGCCTGAA CCTGCTGAAC
CTGACCAACA AGTTCTATTA CGATGCGCTG ATCCAGTCGG ACGGCGGCCG TGCGGTGCCG
GGCGTCGGGC GCACGTTCCT CGCGACGCTC GACTACCGGT TCTGA
 
Protein sequence
MLNRTPFASA LALAFALPIA SPALAQSTSA EPSPAAAAKP GDAPPAAAAA RETLPTISVS 
GQAVQQDFQA ERSTVGAKTP TALRDIPQSV TVINKALMES QGLTSFQDAL RNAPGITIGG
AEGGQIGNNI NLRGFTAQND IYLDGFRDRN QYYRDTFDLD SVEVLYGPSS MLFGRGSTGG
VINQVSKKAN LKPSAEVSTT IGTNDRYRTS VDLNRPLGAT SAFRINAFGQ SLGSTRDVMK
NKDYGIAPEL RFGIGTPTEV TLSALIQHNY DMPDYGVLAV NGHPAPVPKN TFYGLTDDRT
IQDVQTVSAR IDHRVNDALT ISNRTSFSHS MTDARETAAN AVLTGPLSSS TALTNGNYTS
LPMSALYVRL ASHDRVIENH SVDNDTMAHF KFDTGFVKHD LIGGVEVGHD SYTNQAYTRS
GLPILSLINP AYLASTPTNA TQTPANHAES GATTLAAYLN DTVSIGRDWK FVGGLRWDRF
QAHLANTVSA PRYASQTNYF TSVRAGVIYQ PTESQSYYFS YGTSFNPSLE TLTVTNNTQN
LSPEHTKSYE VGGKWDLLND NLSVTSALFQ QEKSNARTQT STGEYLLEGD VRVRGFQASV
TGHITPKWQV FGSYTYMNGV ILGARDGTQG KTLANTPRNT FTLWTTYAFT PHWEIGGGPT
YMSGRYAANT DYVQVGGYTR WDATAAYHAK QWDLRLNLLN LTNKFYYDAL IQSDGGRAVP
GVGRTFLATL DYRF