| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_4438 |
|---|
| Symbol | |
|---|
| ID | 4313331 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | + |
|---|
| Start bp | 1374957 |
|---|
| End bp | 1375844 |
|---|
| Gene Length | 888 bp |
|---|
| Protein Length | 295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 638152278 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_776323 |
|---|
| Protein GI | 115359185 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.000948245 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATAG AAAACTCGGA ACTCGAAGCG TTCGTCGCCG TCGCGGAACT CGGCACGTTT
CATCGCGCGG CGGAAAAGCT GCACCTGACG CAGCCGGGGC TGTCGCGCCG GATCCAGAAG
CTCGAACAAA CGCTTGGCGT CGAGTTGTTC CAGCGCACCA CTCGCAGCGT GACATTAACG
GGCGTCGGTC GTCAGTTCCT GCCGATGGCG CGCGAGCAGA TCGCCCAGCT CGGGATGATG
CTGTCGTCGA TCCAGGAAAT CGCGCAAAAG CGCTACGGCA AGGTGCGGCT GTCATCGATC
CCGACCGTCG TCGCGCAAAC GCTGCCCGAT GTACTGCGTC ACTACTCGGA CAAGTATCCG
CAGGTCGCCG TGCAGATCCT CGACGGCAAT CACGACTTCG TACTGTCGCA GGTGCGCGCG
GGCATCGCCG AGTTCGGCGT GAGCCTGCAC CCGGGCGACG ACGACGATCT GTTGTTCGAA
CCGCTGTTCA CCGACCGCTA CGTGCTGGCA GTCCACGAGG ACGATCCGCT GGCACGCGCG
GACGCCATCA CGCTCGGCGA ATTGCGGCAC GCGAAGCTGA TCATCGGCGG CCGCGACAGC
GGCAACCGTC TGCTGCTCGA AATGCTGATG GGCCAGGAGG CGGTGCGAAC CCGGTGGTTC
TATGAGGTCG AGCACATCTC ATGCGTCGCC GCGCTCGTGG CAGCCGGTGT CGGATGCGCG
ATCCTGCCCG AGAGCGCATT GCGTGCGTAC GGCTCGCCCG AGGTACGCAC GGTGCCGATC
GCGAGCCCGA CGATCGACCG CACGGTCGGC ATCGTGCGGC ATCGCACCAT CTCGATGTCC
AGCTTCGCGA GCGACCTCCA TGCGCTGGTG AAGGCAGCGT TCGCATAA
|
|---|
| Protein sequence | MKIENSELEA FVAVAELGTF HRAAEKLHLT QPGLSRRIQK LEQTLGVELF QRTTRSVTLT
GVGRQFLPMA REQIAQLGMM LSSIQEIAQK RYGKVRLSSI PTVVAQTLPD VLRHYSDKYP
QVAVQILDGN HDFVLSQVRA GIAEFGVSLH PGDDDDLLFE PLFTDRYVLA VHEDDPLARA
DAITLGELRH AKLIIGGRDS GNRLLLEMLM GQEAVRTRWF YEVEHISCVA ALVAAGVGCA
ILPESALRAY GSPEVRTVPI ASPTIDRTVG IVRHRTISMS SFASDLHALV KAAFA
|
|---|
| |