| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_4364 |
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| Symbol | |
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| ID | 4313258 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008391 |
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| Strand | - |
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| Start bp | 1291854 |
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| End bp | 1298969 |
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| Gene Length | 7116 bp |
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| Protein Length | 2371 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 638152204 |
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| Product | outer membrane autotransporter |
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| Protein accession | YP_776250 |
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| Protein GI | 115359112 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain
[TIGR02601] autotransporter-associated beta strand repeat |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00430062 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCGAGGG GAAGCATGAA TATTGCGCAT TCGAAAAAGA GCGGCGAGTC GTTTCCGAGA
TTCCTGTTGC CGACTGGCGT TTTCCTCGCC TTGTCGGGTG CGGGCATCGT TTCCGCCTAT
GCGACCTGCT CGACGGCAGG CACGACGGTG ACCTGTTCGG GTGTCGCGAA TCCGCTGGCG
CCGAGCTATT CGAACAGCGC GAACAACCTG AACGTCACGG TGAACCCCGG CGCGAGCGTC
GGCGTGCTGC TGGGCGTGGG CGGCACCGCG ATGTCGCTGA CCGGCAGCAA CAACACGCTG
ACCAACAACG GCACGATCGA TCCGTCCGTG CTCGGCTCGG GCCTGGGCGT GCTGTCGAGC
GGCGCGGTGG TCGGCAATGC GGCGGCGAGC ACGACGACCG TGACCAACAA CGGCACGATG
AACGGCTCGA CCGGTGTCGC GATCAGCGGC GTGACGGGCA TGGCGCTGTC GGTGCAGAAC
GGCACGGGCG GCACGTCGAC GATCACCAAC ACCGGCACGA TGGGCACGAG CGCGCTGGCC
GGCGCGACGC TCATCGGCGC GGATGCGCCC GTGGTCGCCG CATACGGTGG CGGCACGGTC
AACATGACCA ACAGCGGGAC GATCACCGGT CGCGTGTCGC TCGGATCGAA CGGCACGCCC
GGGCTCGGCA ATACCTTTAC CAACTCGGGC ACGATCAACG GCAGCGTGTC GATGGGCGCG
AACAGCACCA ACACGTTCAA TGCCGTGACG GGCTCGTCGG TCAACACGGC GGGCGGCACG
GGCGGCGCGT TCAACATCAC GGTCGGCCCG GTCACGCTCG GCGTCGCGGC GACCGGCACC
GTCGACGGCG GCGCCGGCGG CAACAACACG CTGGTGCTGC AGCAAGGCGG GTCGGCCAAC
GGCACGATCG CGGTCAACAA CTACATCAAC TTCAATCATC TCGACGTCAC GAGCGGCAAC
TGGACGATCA ACGGCGCGTC GACCGCGCAG GACGCGACGC TGGCGGGCGG CGTCGCGATC
ATCGGCGACA ACGCGTCGCT CGGCACGGGC ACGATCACGG CCACCGGCGG TGCGCTGCAG
GCCGGTGCCG CCGGGCTCGA CGTCAGCAAC AACGTGACTC TCGGCGCGGG CGGGCTGACG
GTGCAGGGCG CCACAGGCCT CTCGCTGTCG GGCACGGTGT CGGGCGCGGG CGCGCTGACG
AAGAACGACG GCGGCATCCT GACGCTGTCG GGCGCGAACA GCTACACGGG CGGCACGAAC
CTGAACGCCG GCGGCCTTGT GGTCGGCAAC AACGACGCGC TCGGCGCCGG TGCGTTGAAC
GTCAACGCGT CGGCGTCGCT CGACACGAGC ACGAACGTGA CGCTCGGCAA CGCGGTCAAT
CTCGCGACGG GCGCGACGCT GGCGCTGGGC GGCAGCAACG ATCTCGGCCT GGCCGGCACG
ATCAGCGGCG CCGGCGGCCT CGTGAAGAAC GGCACGGCGA CGACGACGCT GACCGGTGCG
AACACGTACA CCGGCGACAC GACGATCAAC AGCGGCACGC TGGCGCTCGG CGCGGGCGGC
AGCCTCGCGT CCACGGGCAC GGTCAACCTC ACCGGCGCGG GTGCGACGTT CGACCTGGCC
GGCGCGACGG GCGCGCAGAC GATCGGTTCG CTCGCCGGGG CGGCCGGCAC GAACGTGAAC
CTCGGCGGCA ATTCGCTGAC GCTCGACGGC AGCGCGAATA CCACCTACGC CGGCACGATC
GGCGGCACGG GCGGCTTGAC GCTGTCGGGT ACCGGCACGC AGGCGCTGAC CGGCGCGAAC
GTCTACACGG GCGACACGAA CCTGAACGGC GGCAACGTCG TCGTCGGCAG CAATACGGCG
CTGGGCTTCG GCGCGATCAA CGTCAACGGC TCGTCGACGC TCGATGCGAC CACCAACGTG
TCGCTGACGA ACGGCGTCAA CCTCGCCACC GGCACGACGC TCACGGTCGG CGGCAGCACC
GATCTCGGGC TGAGCGGCAC GATCGCCGGC GCGGGCGGGC TGGTGAAGAA CGGTGCGGCG
GCGCTGACGC TGACAGGCGC GAATAGTTAC ACGGGCGGCA CGACGCTGAA CGCCGGCGGC
CTCGTGCTCG GCAACGACGC GGCGCTGGGC TCCGGCGCGC TGAGCGTCGG CGGCGCGGCG
ACGCTCGATA CGACCACGAG CCTGTCGGTC GCCAACGCGA TCGATATCGG CACCACCGCG
ACGCTGACGC TCGGCGGCAG CAACGCACTC GGGCTGAGCG GCGCGATCAC AGGCGCGGGC
GCGCTCGTGA AGGACGGCGC GGCGACCACG ACGCTGACGG GCACGAACAC CTACACGGGC
GGCACGACGA TCAACGCCGG CACACTGGCG ATCGGCGCGG GCGGCAGCCT GTCGTCCACG
GGTACGGTGA ACCTGGCCAA TGCGGGCGCG GCATTCGACA TCGCCGCGGG CGGCGCACAG
TCGATCGGCG CGCTGTCGGG CGCGGCCGGC ACGAGCGTGA ACCTGGGCGC AAACGCGCTG
ACGCTGGGCG GGAGCGCGAG CGGCACGTTC GGCGGCACGA TCGGCGGCAC GGGCAGCCTG
ACGCTGAACG GCACCGGCAC GCAGACGCTG AACGGCGCGA ATACCTATAC AGGCGGCACG
AACCTGAACA GCGGCAGCCT CGTGCTCGGC AACAACGCGG CGCTCGGCAG TGGCGCGTTG
AATGTCGGCG GCGCGGCGAC GCTCGATACG AACGCGAGCC TGTCGGTCGC CAACGCGATC
GATATCGGCA CGGGCGCGAC GCTGACGCTC GGCGGCACCA ACGCGCTCGG GCTGGGCGGT
GGGATTTCCG GTGCAGGCGC GCTCGTGAAG GACGGCGCGG CGACGACCAC GCTGACGGGC
ACGAACACCT ACACGGGCGG CACGACGATC AATGCCGGCA CGCTGGCGGT CGGCGCGGGC
GGCAGCTTCG CATCGACCGG CACGATGAAT CTCGCGGGTG CGGGCGCGAC GCTCGATTTG
AGCGGTGCGT CGGGTGGGCA GTCGCTCGGC GCGCTGTCCG GCGTCGCGGG GACGAACATC
GATCTGGGCG GCAACGCGCT GACGCTGGGC GGGACCGCGA GCGGCACGTT CGGCGGCACG
ATCGGCGGCA CGGGCAGCCT GACGCTGGAC GGCACCGGCA CGCAGACGCT GAACGGCGCG
AGCACCTATT CGGGCGGCAC GAACCTGAAC AGCGGCGGCC TCGTGCTCGG CAACAACGCG
GCGCTGGGCT CCGGCGCATT GAATGTCGGC GGCGCGGCGA CGCTCGATAC GAACGCGAGC
CTGGCGGTCG CCAACGCGAT CGATCTCGGC ACGGGCGCGA CGCTGACGCT CGGCGGCACC
AACGCACTCG GGCTGAGCGG CGCGATCTCC GGCGCAGGCG CGCTCGTGAA GGACGGCGCG
GCGACGACCA CGCTGACGGG GACGAATACC TATACCGGCG GCACCACGAT CAACGCCGGC
ACGCTGGCGG TCGGCGCGGG CGGCAGCTTC GCTGCGACCG GCACGATGAA TCTCGCGGGT
GCAGGCGCGA CGCTCGACCT CAGCGGCGCG TCGGGCGGGC AGACGCTCGG TGCGCTGTCG
GGCGTGGCCG GCACCAATGT GAGCCTGGGC GCGAATGCGC TGACGCTGGG CGGCACGGCG
AGCGGCACCT TCGGCGGCGT CATCGGCGGC ACCGGCGGCC TGACGCTGGC GGGCACCGGC
ACGCAGACGC TGTCCGGCGC GAACACCTAC ACGGGCGGCA CGACGATCAA CGGCGGCAGC
ACGCTCGCGC TCGGCGCGGG CGGCAGTCTC GCGTCGACGG GCACGGTGAA TCTGGCCGGC
GCGGGCGCGA CGTTCGACCT TGGCGGTGCG TCGGGCGCGG AGACGATCGG CGCGCTGATC
GGCGCGACCG GCTCGACCGT GAACCTCGGC GCGAATGCGC TGACGCTGAG CGGCAGCGGC
AACAACACGT TCGGCGGCGC GATCGGCGGC ACCGGCAGCC TGACGCTGGC CGGTGCCGGC
ACGCAGACGC TGACGGGCGC GAACACCTAT ACCGGCGGCA CGACGATCAA CGGCGGCAGC
ACGCTTGCGC TCGTTTCGGG CGGCAGCCTC GCATCGACCG GCACGGTGAA CCTGGCCGGC
ACGGGCGCGA CGTTCGACGT GAGCGGTGCG GCGGGCGCCG AAACGATCGG CGCGCTGTCG
GGCGCGGCCG GCACGAACGT GAACCTCGGG GCGAATGCGT TGACGCTGAA CGGCAGCGTT
GCCAGTACGT TCGGCGGGAC GATCGGCGGC ACCGGTGCCG TGACGGTCGC GGGCACCGGC
ACGCAGACGC TCACGGGCGC GAACACGTAC ACCGGCGGCA CGACGATCAA CGGCGGCAGC
ACGCTTGCGC TCGGTTCGGG CGGCAGCCTC GCATCGGGCA GCACGGTGAA CCTCGCCGGC
ACGGGCGCGA CATTCGACCT GAGCGGCGCG TCGGGCACGC AGACGCTCGG CACGCTGACC
GGCACGGGCG GCACGAACGT GAACCTCGGC GCGAACGCGC TGACGTTGAA CGGCAGCGGC
AACGGCACGT TCGGCGGCGC GATCGGCGGC ACCGGCGGCC TGACGCTCGC GGGCACCGGC
ACGCAGACGC TCACAGGCGC GAACACGTAC ACGGGCGGCA CGACGATCAA CGGCGGCAGC
ACGCTTGCGC TGGGTTCGGG CGGCAGTCTC GCATCGAGCG GCTCGGTGAA TCTCGCCGGG
TCGGGCGCGA CGTTCGACGT GAGCGGTGCG GCGGGTGCCG AAACGATCGG CGCGCTGTCG
GGCGTGGCGG GCACGACCGT GAACCTCGGC GCGAACGCGC TGACGCTGAA CGGCAGCGGC
GCCAGCACGT TCGGCGGGAC GATCGGCGGC ACCGGCGCCG TGACCGTCGC GGGCACCGGC
ACGCAGACAC TCACGGGCGC GAACACATAC ACCGGCGGCA CGACGATCAA CGGCGGCAGC
ACGCTCGCGC TCGGCACGGG CGGCAGCCTC GCGTCGACGG GCGCGGTGAA CCTCGCCGGC
ACCGGCGCGA CGTTCGACGT GAGCGGCGCA GCGGGCACGC AGACGATCGG CACGTTGTCC
GGGGCGGCCG GCAGCACCGT GAACCTCGGC GCGAACGCGC TGGCGTTGAA CGGCAGCACC
AACGGCACGT TCGACGGCGT CATCGGCGGC ACGGGCGGCG TGACGGTCGC CGGCACCGGC
GTCCAGACGC TGACCGGCAG CAACACGTAC ACGGGCGGCA CGACGATCGC GTCGGGCGGC
ACGCTGCAGC TCGGCAACGG CGGCACGTCG GGCAGCGTGG TCGGCAATGT CGTCGACAAC
GGCGCACTGA TCGTCAACCA GTCCGGCAGC GTGACGCTCG CGAACGTGCT GTCCGGCACC
GGTTCGCTGA CCCAGGCCGG CAGCGGAGCC CTGACGCTGA CGGGCACCAA TACGCTGAGC
GGCCCGACGA CCGTCGCCGC GGGCACGCTC GACGTCGCCG GTTCGCTCGC CCAGTCGGCC
GTGACCGTGC AGAACGGCGC GACGCTGACG GGCACCGGCA CGGTTGGCGG CGTCGTGGTC
CAGAGCGGCG GGATCGCGGC CGTGTCGCAA CCGGGCGCGG CGCTGAACGT CGCCGGCAAC
GTCACGTTCC AGCCGGGCTC GACGCTGCAG GTCGCGGTCA CGCCGCAGCA AAGCGGCAGC
ATTGCCGCGG GCGGCACGGC GACGCTGAAC GGCGGCACCG TGCAGGTGCT CGCGAACCAG
GCCAGCTTCC AGCCGAGCAC GACGTACACG ATCCTCAGCG CATCGTCGGG CGTGCAGGGC
GCGTTCAGCC AGGTGAATTC GAACTACGCG TTCCTGATGC CGACGCTCAG CTACGATCCG
AACCACGTGT ACCTGCGGCT CGTCACGAAC GGCACGGCGC TGCCCGACGT CGCGACGACG
CCGAACCAGC GCTCGGTCGC CACCGCGATC GGTGCGCTCG GCGCGGGCAA CACGCTGTAC
GACAAGGTGT TGACGACCGA TGCGGCCACC GCGCGCCAGG CCTACTCGGT GCTCGACGGC
GAGCTGCAGG CGAGCCTGAA GAGCATGCTG CTGCTCGACA GCCGCTATGT GCGCGATGCC
GTGACCGATC GCGTGCGCCA GGGTCTCGCG CCCGGATCGG GGCCGCTCGC GGCGCTGTCG
TCGGGCGGGG CCGCGCTGTG CGGCGACAAC ACGGCCGGCG TGACCGACCC GACGCTCGCG
CCCGAGCGCC GGATCGGCTC GCGCGACGGC TGCTACGGCG GCACGCCTTA CCAGCCGGTG
GTCTGGGGGC AGGCGTTCGG CGGCCGCAGC CGGCTCGCGG GCGACGGCAA CGCGTCGACG
ATCAACCGCA GCATGACCGG TTTCATCGCC GGTGCCGACA TGGCGCTCAA CGACAAGTGG
CGGGCCGGTC TGGCCGCGGG CGTTACGCAC AGCTCGCTCG ACAACGACCA GAGTTCGTCG
GCGGCGGTCA ACAGCTACTA CCTGTCGCTG TACGGCGGTG CGCAGTACGG CGCGCTCGGC
GTGCGCGGCG GCGCGTCGTA CACGTGGTAC CGGATCAACA CCGACCGCTA TCCGGGCTTC
GCGGGCTTCT CGGACCACAA TTCGGCCGGC TACAACGCGC ATTCGGCGCA GGTGTTCGGC
GAAGTCGGCT ACGCGCTGCC GCTCGGGCCG GTCGCGCTCG AACCGTTCGC GGGTCTGGCC
TACGTGAACC TGCATACCGA CGGCTATACC GAAAGCGGCG GTGCGGCGGC GCTGCAGGCA
GGCGGCCAGA CGACCCACAT CGGGTTCTCG ACGCTCGGCC TGCGCGCCGC GTCGCAGCTC
GGCTCGATCG CGAGCGGCAC GTTCACCGCG CGCGGCACGG TCGGCTGGCG GCATGCGTTC
GGCAACGTGC GGCCGTCGTC GGCGTTCACG TTCGCGAACG GCGGCACGTC GTTCCAGGTA
TCGGGCGTGC CGATTGCTCG CGACAGCGCG GTACTCGAGG CCGGCATCGA CGCGAACATC
ACGAAGCGCC TGACGCTCGG CCTCACGTTC AGCGGCCAGT ACGGCAGCGG CGTGCGCGAC
AACGCGGTGC TCGGCAACAT CCTGTGGAAG TTCTGA
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| Protein sequence | MPRGSMNIAH SKKSGESFPR FLLPTGVFLA LSGAGIVSAY ATCSTAGTTV TCSGVANPLA
PSYSNSANNL NVTVNPGASV GVLLGVGGTA MSLTGSNNTL TNNGTIDPSV LGSGLGVLSS
GAVVGNAAAS TTTVTNNGTM NGSTGVAISG VTGMALSVQN GTGGTSTITN TGTMGTSALA
GATLIGADAP VVAAYGGGTV NMTNSGTITG RVSLGSNGTP GLGNTFTNSG TINGSVSMGA
NSTNTFNAVT GSSVNTAGGT GGAFNITVGP VTLGVAATGT VDGGAGGNNT LVLQQGGSAN
GTIAVNNYIN FNHLDVTSGN WTINGASTAQ DATLAGGVAI IGDNASLGTG TITATGGALQ
AGAAGLDVSN NVTLGAGGLT VQGATGLSLS GTVSGAGALT KNDGGILTLS GANSYTGGTN
LNAGGLVVGN NDALGAGALN VNASASLDTS TNVTLGNAVN LATGATLALG GSNDLGLAGT
ISGAGGLVKN GTATTTLTGA NTYTGDTTIN SGTLALGAGG SLASTGTVNL TGAGATFDLA
GATGAQTIGS LAGAAGTNVN LGGNSLTLDG SANTTYAGTI GGTGGLTLSG TGTQALTGAN
VYTGDTNLNG GNVVVGSNTA LGFGAINVNG SSTLDATTNV SLTNGVNLAT GTTLTVGGST
DLGLSGTIAG AGGLVKNGAA ALTLTGANSY TGGTTLNAGG LVLGNDAALG SGALSVGGAA
TLDTTTSLSV ANAIDIGTTA TLTLGGSNAL GLSGAITGAG ALVKDGAATT TLTGTNTYTG
GTTINAGTLA IGAGGSLSST GTVNLANAGA AFDIAAGGAQ SIGALSGAAG TSVNLGANAL
TLGGSASGTF GGTIGGTGSL TLNGTGTQTL NGANTYTGGT NLNSGSLVLG NNAALGSGAL
NVGGAATLDT NASLSVANAI DIGTGATLTL GGTNALGLGG GISGAGALVK DGAATTTLTG
TNTYTGGTTI NAGTLAVGAG GSFASTGTMN LAGAGATLDL SGASGGQSLG ALSGVAGTNI
DLGGNALTLG GTASGTFGGT IGGTGSLTLD GTGTQTLNGA STYSGGTNLN SGGLVLGNNA
ALGSGALNVG GAATLDTNAS LAVANAIDLG TGATLTLGGT NALGLSGAIS GAGALVKDGA
ATTTLTGTNT YTGGTTINAG TLAVGAGGSF AATGTMNLAG AGATLDLSGA SGGQTLGALS
GVAGTNVSLG ANALTLGGTA SGTFGGVIGG TGGLTLAGTG TQTLSGANTY TGGTTINGGS
TLALGAGGSL ASTGTVNLAG AGATFDLGGA SGAETIGALI GATGSTVNLG ANALTLSGSG
NNTFGGAIGG TGSLTLAGAG TQTLTGANTY TGGTTINGGS TLALVSGGSL ASTGTVNLAG
TGATFDVSGA AGAETIGALS GAAGTNVNLG ANALTLNGSV ASTFGGTIGG TGAVTVAGTG
TQTLTGANTY TGGTTINGGS TLALGSGGSL ASGSTVNLAG TGATFDLSGA SGTQTLGTLT
GTGGTNVNLG ANALTLNGSG NGTFGGAIGG TGGLTLAGTG TQTLTGANTY TGGTTINGGS
TLALGSGGSL ASSGSVNLAG SGATFDVSGA AGAETIGALS GVAGTTVNLG ANALTLNGSG
ASTFGGTIGG TGAVTVAGTG TQTLTGANTY TGGTTINGGS TLALGTGGSL ASTGAVNLAG
TGATFDVSGA AGTQTIGTLS GAAGSTVNLG ANALALNGST NGTFDGVIGG TGGVTVAGTG
VQTLTGSNTY TGGTTIASGG TLQLGNGGTS GSVVGNVVDN GALIVNQSGS VTLANVLSGT
GSLTQAGSGA LTLTGTNTLS GPTTVAAGTL DVAGSLAQSA VTVQNGATLT GTGTVGGVVV
QSGGIAAVSQ PGAALNVAGN VTFQPGSTLQ VAVTPQQSGS IAAGGTATLN GGTVQVLANQ
ASFQPSTTYT ILSASSGVQG AFSQVNSNYA FLMPTLSYDP NHVYLRLVTN GTALPDVATT
PNQRSVATAI GALGAGNTLY DKVLTTDAAT ARQAYSVLDG ELQASLKSML LLDSRYVRDA
VTDRVRQGLA PGSGPLAALS SGGAALCGDN TAGVTDPTLA PERRIGSRDG CYGGTPYQPV
VWGQAFGGRS RLAGDGNAST INRSMTGFIA GADMALNDKW RAGLAAGVTH SSLDNDQSSS
AAVNSYYLSL YGGAQYGALG VRGGASYTWY RINTDRYPGF AGFSDHNSAG YNAHSAQVFG
EVGYALPLGP VALEPFAGLA YVNLHTDGYT ESGGAAALQA GGQTTHIGFS TLGLRAASQL
GSIASGTFTA RGTVGWRHAF GNVRPSSAFT FANGGTSFQV SGVPIARDSA VLEAGIDANI
TKRLTLGLTF SGQYGSGVRD NAVLGNILWK F
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