Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_4345 |
Symbol | |
ID | 4313239 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008391 |
Strand | + |
Start bp | 1271806 |
End bp | 1274145 |
Gene Length | 2340 bp |
Protein Length | 779 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 638152185 |
Product | lysine decarboxylase |
Protein accession | YP_776231 |
Protein GI | 115359093 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.913675 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.000705117 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACCGCTA CCTTGACCCA ACCGGCGTTT CGCCGCCTCG GCATGAAGGC GCTGCTCGTG CAGCACGACA TCGACGAACG CACGGCCACC GGCCGCGCAG CCACCGCCCT CGCCGAAGAA TTGCGCGCCC GGCTCGTCGA CGTCGTGATC GCGACGTCCG CCGAAGACGC GCGCGCGGTG GTCGACGCCG ATCCCGCGAT CCAGTGCCTG CTGCTCAACT GGGAGCTCGG CAACGATCCC GAGCATGCGC CCGCGCGGGC CGTGCTCGAC GCGATGCGCG CACGCAATGC GACGGTGCCG GTGTTCCTGC TCGCGAGCCG CGCGAGCGCG GCCGCGATTC CCGTCGACGC GATGCGCAAG GCCGACGACT TCATCTGGAT GCTGGAGGAC ACCACCGCGT TCATCGGCGG GCGGATCGTC GCCGCGATCG AACGCTATCG CGAGACCGTG CTGCCGCCGA TGTTCCGCGC ACTCGCGCAG TTCTCGCGCG TGTACGAATA CTCGTGGCAC ACGCCGGGCC ACACAGGCGG CACCGCATTC CTGAAATCGC CGGTCGGCCG CGCGTACTTC GAATTCTTCG GCGAAGCGCT GTTCCGCTCG GACCTGTCGA TCTCGGTCGG CGAACTCGGC TCGCTGCTCG ACCACTCGGG CCCCATCGGC GAAAGCGAAC GCTACGCCGC GCGCGTGTTC GGCGCGCACC GCACGTATCA CGTGACGAAC GGCTCGTCGA TGTCGAACCG CGTGATCCTG ATGGGGAGCG TCACGCGCAA TCAGGTCGCG CTGTGCGACC GCAACTGCCA CAAGTCGGCC GAGCATGCGA TGACGATGTC CGGCGCGATT CCGACCTACC TGATCCCGTC GCGCAACCAT TACGGGATCA TCGGGCCGAT CATGCCGGAA CGGCTCACGG CCGCCGCCGT GCGGCTCGCG GTCGACGCGA ATCCGCTCGT GCGCGGCCGC GACGGCATCG ATCCGACGCC CGTGCATGCG CTGATCACGA ACTCGACCTA CGACGGCCTC TGCTACAACG TCACGCGCGT CGAGGAACTG CTCGGCCAGA GCGTCGACCG GCTGCATTTC GACGAAGCCT GGTACGGCTA TGCGCGCTTC AACCCGATCT ACCGCGACCG TCACGCGATG CACGGCGATC CGTCGCAGCA CGACGCGAGC AAGCCGACCG TGTTCGCGAC GCAATCGACG CACAAGCTGC TCGCCGCGCT GTCGCAGGCA TCGTTCATCC ATGTCCGCAA CGGCCGCAAC CCGATCGAGC ATGCACGCTT CAACGAGGCG TACATGATGC ACGCGTCGAC GTCGCCGAAC TACGCGATCA TCGCGTCGAA CGACGTGAGT GCCGCGATGA TGGACGGCCC CGGCGGCGAG GCGCTGACGA CCGACGCGAT CCGCGAGGCC GTGTCGTTTC GCCGGATGCT CGCGCGACTG CACGCGGAAT GCGAGGAGAA CGACGACTGG TTCTTCAACG GCTGGCAGCC GGACACCGTG GTCGACCGCA AGACGGGCCG CCGCGTGCGC TTCCATGAAG CGGACGAAAC GCTGCTCGCC ACCGATCCGT CGTGCTGGGT GCTGCATCCG GGCGACACGT GGCACGGCTT CGGCGAGATC GAGGACGACT ACTGCATGCT CGACCCGATC AAGGTATCGA TCGTCACGCC GGGCGTCGCG CCGCACGGCG GCCTGATGCC GGTCGGCATT CCGGCATCGG TCGTCACCGC GTATCTGGAC CGGCACGGGA TCGTCGTCGA GAAGACGACC GACTTCACGA TCCTGTTCCT ATTCTCGCTC GGCGTGACGA AGGGCAAGTG GGGCACGCTC GTCAACACGC TGCTCGACTT CAAGCGCGAC TACGACGCGA ACGCGCCGCT CGAACAGGCG CTGCCGGACC TCGTGGCGCG TTATCCGGAC CGCTACGGCA AGCTCGGCCT GCGCGAGCTG TGCGACCTGA TGTTCAGCGC AATGAGCGAC CTGAAGACGA CCGAGATGAT GTCGCGCGGC TTCTCGACGC TGCCGCAGCC CGACTTCAGC CCGGCCGAGG CGTTCGAGCA TCTCGTGCAC AACGACATCG AGATGCTGGA GCTGTCGGAG ATGGCGGGCC GCACCGTCGC GACGGGCGTC GTGCCCTATC CGCCCGGCAT TCCGCTGCTG ATGCCCGGCG AGAACGCGGG GCCGGCCGAC GGGCCGCTGC TCGGCTACCT GAAGGCGCTC GAGCAATTCG ACCTGCGCTT CCCCGGCTTC ACGCACGATA CGCACGGCGT CGAAGTCGAG GACGGCGTGT ACCGGATCGC CTGCATCCGG CAAGTCGATC GCAAGACCAA CACGCGCTGA
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Protein sequence | MTATLTQPAF RRLGMKALLV QHDIDERTAT GRAATALAEE LRARLVDVVI ATSAEDARAV VDADPAIQCL LLNWELGNDP EHAPARAVLD AMRARNATVP VFLLASRASA AAIPVDAMRK ADDFIWMLED TTAFIGGRIV AAIERYRETV LPPMFRALAQ FSRVYEYSWH TPGHTGGTAF LKSPVGRAYF EFFGEALFRS DLSISVGELG SLLDHSGPIG ESERYAARVF GAHRTYHVTN GSSMSNRVIL MGSVTRNQVA LCDRNCHKSA EHAMTMSGAI PTYLIPSRNH YGIIGPIMPE RLTAAAVRLA VDANPLVRGR DGIDPTPVHA LITNSTYDGL CYNVTRVEEL LGQSVDRLHF DEAWYGYARF NPIYRDRHAM HGDPSQHDAS KPTVFATQST HKLLAALSQA SFIHVRNGRN PIEHARFNEA YMMHASTSPN YAIIASNDVS AAMMDGPGGE ALTTDAIREA VSFRRMLARL HAECEENDDW FFNGWQPDTV VDRKTGRRVR FHEADETLLA TDPSCWVLHP GDTWHGFGEI EDDYCMLDPI KVSIVTPGVA PHGGLMPVGI PASVVTAYLD RHGIVVEKTT DFTILFLFSL GVTKGKWGTL VNTLLDFKRD YDANAPLEQA LPDLVARYPD RYGKLGLREL CDLMFSAMSD LKTTEMMSRG FSTLPQPDFS PAEAFEHLVH NDIEMLELSE MAGRTVATGV VPYPPGIPLL MPGENAGPAD GPLLGYLKAL EQFDLRFPGF THDTHGVEVE DGVYRIACIR QVDRKTNTR
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