| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_4236 |
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| Symbol | |
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| ID | 4313131 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008391 |
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| Strand | + |
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| Start bp | 1160194 |
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| End bp | 1161672 |
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| Gene Length | 1479 bp |
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| Protein Length | 492 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 638152077 |
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| Product | carbohydrate-selective porin OprB |
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| Protein accession | YP_776123 |
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| Protein GI | 115358985 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3659] Carbohydrate-selective porin |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.269576 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAATC GTTTCGAACC CGCGCGCACG CGCCGACTCG ATGCGCTCAC GGCGCTTCTC
CTGTCCCTCG CCGCAGCGCC CGCATTCGCA CAATCGGCGT CGCCCGCCGC TGCCGAATCG
ACGGCCGGGG CCAGCGACAC CGCCGCCGTC CAGCCCGCCG ATGCCGCCGC GCCCGCCCCC
ACCGGCTTCT GGGACCGTTC GAACCTGTTC GGCAACATGG GCGGCCTGCG CGACGTGCTC
GGCGACCACG GCGTCACGCT GAGCCTGCAG GAAACCAGCG AATACCTGTA CAACGCCGCG
GGCGGCACGA ATCGCGGCGG TGCGTACCAG GGCGTCGCCC AATTCGGCTT CAACGTCGAT
ACGGAGAAGG CGATCGGGCT GCCGGGCGGC ACGTTCAACG TGTCGGGGCT GCAGATCCAC
GGCACCAACC TCACGCAGCG CTACCTGCAG ACGCTGCAGA CCGCCACCGG TATCGAGGCG
AATTCGACCA CGCGGCTGTG GGAGCTCTGG TACCAGCAGG CGTTTCTCGA CGGCAAGGCC
GACGTGAAGG TCGGCCAGCA GAGCGTCGAC CAGGAGTTCA TGGTGAGCCA GTACGCGGCG
ACGTTCATGA ACGCGACGTT CGGCTGGCCC GTTCTGCCGG CGACCGACCT GCCGGCCGGC
GGCCCCGCGT ATCCGCTGTC GTCGCTCGGC GTGCGGCTGC GCGTGAAACC GGCCGACGCG
TGGACCGCGA TGGTCGGCGT GTTCGACGGC AACCCGGCCG GCCGCAGCGA CGGCGACGCC
CAATCGCTGA ACGCGCACGG CACCAACTTC AACCTGCGCA GCGGTGCGTT CGTGATCGGC
GAACTCCAGT ACGCGCTGAA CGCGCCGCCC GCCGATCCGA AGGCGCCGCC ACCGGCCGGC
CTGCCGGGCA CGTACAAGCT CGGCTTCTGG TATCAGTCGC AGCACGCGAA CGATCCGCGC
TTCGGCACCG ACGGGCTGTC GCTCGCGAAT CCCGACAGCA ACGGGATCGC CGCCACGCAT
CGCGGCAACT ACGGCTTCTA TGCGGTCGCG GATCAGATGG TGTGGCGGCC GTCGGCCGAC
AGCCCGCGCT CGGTCGGCGT GTTCGCGCGC GTGATGGGCT CGCCGGGCGA TCGCAACGTC
GTCGATTTCG CGGCGAATGC CGGCATCACG CTGAAGGCAC CGTTCGCCGG ACGCGACAAC
GATACGGCCG GCATCGCGGT CGGCTACGCG AAGATCGGCT CGCACGCGCG TGCGCTTGAC
GGCGACACCG GCACCTACAC GACGCCTGGC TATCCGGTGC GCCGCGCGGA AACGGTGATC
GAGGCGACCT ACCAGTACCA GGTCACGCCG TGGTGGCAAT TGCAAGCCGA CCTGCAGCAC
TTCTTCCGGC CGGGCGGCGG CATCCCGAAC CCGAACGCGG CCGGCGCGCG CATCGGCGAC
GAAACGGTGG TCGGCGTGCG CACGACGATC ACGTTCTGA
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| Protein sequence | MKNRFEPART RRLDALTALL LSLAAAPAFA QSASPAAAES TAGASDTAAV QPADAAAPAP
TGFWDRSNLF GNMGGLRDVL GDHGVTLSLQ ETSEYLYNAA GGTNRGGAYQ GVAQFGFNVD
TEKAIGLPGG TFNVSGLQIH GTNLTQRYLQ TLQTATGIEA NSTTRLWELW YQQAFLDGKA
DVKVGQQSVD QEFMVSQYAA TFMNATFGWP VLPATDLPAG GPAYPLSSLG VRLRVKPADA
WTAMVGVFDG NPAGRSDGDA QSLNAHGTNF NLRSGAFVIG ELQYALNAPP ADPKAPPPAG
LPGTYKLGFW YQSQHANDPR FGTDGLSLAN PDSNGIAATH RGNYGFYAVA DQMVWRPSAD
SPRSVGVFAR VMGSPGDRNV VDFAANAGIT LKAPFAGRDN DTAGIAVGYA KIGSHARALD
GDTGTYTTPG YPVRRAETVI EATYQYQVTP WWQLQADLQH FFRPGGGIPN PNAAGARIGD
ETVVGVRTTI TF
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