| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_4024 |
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| Symbol | |
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| ID | 4312919 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008391 |
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| Strand | + |
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| Start bp | 941499 |
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| End bp | 944099 |
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| Gene Length | 2601 bp |
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| Protein Length | 866 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 638151865 |
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| Product | fimbrial biogenesis outer membrane usher protein |
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| Protein accession | YP_775911 |
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| Protein GI | 115358773 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.469528 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCCGA CCCGACTGCC TCGCCGCGGC GCGGCCGACA TGCCGCACGT CAAGCCGATC
CATCTACTGG TGGCGGCCTG CGTCGCCGCG TGGTCCGCCC ATGGCCGCGC GACGACGCAG
GCAGCCGCCG AAAGCACGCT CGCGCACGTC GAGTTCGACG GCGCGTTCCT GCAGAGCCGC
CTGGGCAAGC ATGTCGATGT GTCGCGCTTC GCGCAGCGCA ACGTGACGGC GCCCGGCGTG
TACACCACCG ACATCCATGT CGGTCCCGAC TGGATCGGCC GCTACGACGT GCGCTTCGTG
GCCGCGCCGG ATTCGGGCGA CGCGCGGCCG TGCTTCGACC GCACGCAGCT CGAGCGCGTT
GGCGTCGATT TCGGCAAGCT CGCTCCGGAG GTGCTCGCGC GACTGGACAG CGACGGCGCC
TGCCTGCAAC TCGAGCAGGT CGTGCCGGGC GCCAGCGCGG CATTCGACTT CGCGCGACAG
ACACTGCGGC TGTCGATCCC GCAGGCGTCG CTCGTACGCA AGGCGCGCGG CTACGTGAGC
CCCGATCAAT GGACCTCCGG CGAAACCGTC GGCCTGCTCG GCTACAACTT CAATCTTTAT
ACGTCGAAGG CCAGCGGCCA CACCACGCAG ACGCAAGGCT ATCTCGGCCT GAACGGCGGC
GTGAACCTCG GCAACTGGCG CTTTCGCCAC GAAGGCTCCT ATTCATGGTC GTCGCGCGGT
GAGAGCCGGT ATCAGGACAT CGCGACCTAT CTCCAGCGCG ACTTGCCGTC GCTGTCGTCG
CAGCTCGTCG TCGGCGAAAG CTATACGTCG GGCGAACTGT TCGACTCGAC GCAGTTCCGC
GGCGTGCGCC TGTCGACCGA TGACCGCATG CTGCCCGACT CGCTGCGCGG CTATGCGCCC
GTGGTGCGCG GCATCGCGAA CAGCAACGCG AAGGTGACGA TCCGCCAGAA CGACGTGACG
ATCTACGAGA CGACGGTCGC ACCCGGCAAT TTCGAAATCG ACGACCTCTA TCCGACCGGG
TACGGCGGCG ACCTGCAGGT ATCGGTTGCC GAAGCCGACG GCTCCGTGCA CTCGTTCTCG
GTACCCTACG CCGCCGTGCC GATGTCGCTG CGGCCGGGCA TCGGCCGCTA CAGCTTCGTC
GCGGGCACGC TGCGCAATCC CCACGGATCG AGCCAGCCGC TGTTCACGCA GGCGACCTAC
CAGCGCGGCC TGACCAACCT GCTGACGGCC TACGGCGGCG TCACGCTCGC GGGCGGTTAC
GCGTCGGCGA TGCTGGGCGG CGCGTTCAAC ACGTCGTTCG GCGCGTTCGG CGCGGACGTC
ACGCATGCGC TGACCTCGAT CCCGGGCGCG AAGCGCTACA GCGGTTCGAG CGTGCGCGTC
AGCTATGCGA AGTCGGTCGA TGCGACCGGC ACCGATATCG CACTCGCCGC GTATCGCTAT
TCGACGGACG GCTATTTCGG CCTCAACGAC GCGATGCAGG CACGCGATGC CGCGCGCGAC
GGCCGCTCGG CGCAGTCGGT CTGGCGCCAG CGCAATCGCG CGTCGCTGGC GCTCACCCAG
CGGCTGGGCA CGACCGGCGG CCGCATCAAT ACGACGGCAT CGGCCGTCAA CTACTGGAAC
CGCCCCGGCT CGGACGTCAA TTACTCGGTC GGCTACACGA ACCAGTTTCG CAATATTTCC
TACAGCCTGA CGGCCACGCG GCAGCGCAAT GCCGGCGGCG ACATGGGCAC GCTCTATTAC
GCCAGCGTCA CGATCCCGTT GGGCCGCGAG CGCCCGATGA CCGTGTCGGG CAACGTGTCG
CGCGACACGC TCGGCCGCAC CCGGTTGCAA TCGACGCTGT CCGGATCGCT CGGCGAGGAC
CACGCGCTGT CGTACAGCGT CAGCGCGAAC CACGCGTCCG GCCCGAACTC GGGCACGGAC
GGCAGCGCCA ACGTCACGTA CCGCACGCGC GTCGCGGAAG TCAATGCCAG CGCCGGCGCG
AGCACGGACT TCCAGCAGGG CTCGCTCGCT GTGCGCGGCG CGCTGGTCGC ACACCGCGGC
GGCATCACGT TCTCGCAGCC GGTATCCGAG ACGTTCGCGA TCGTCGAAGC GCCCGGCGCG
GCCGGCGCGC GCGTCACGAA CGCGGCGGGC GTCAAGGTCG ACGGCAACGG CTACGCGGTC
GTGCCGTATC TCACGCCATA CAGCCTCAAT ACGGTCGCAC TCGATCCGAA GGGCATCCCG
ATGGATGTCG AGCTGAAGGA AACCAGCCGG CAGATCGCGC CGCGCGCCGG CGCGGTGCCG
CTCATCCGGT TTGCGACCGA CACCGGCCGC GCGGCGCTCG TTCAGGCGCG CCAGGCCGAC
GGCACGCCGT TGCCGTTCGG CGCCGCGGTG CACGACGAGA CCGGCAAGGA AGTCGGCGTC
GTCGGCCAGG CGAGCAGGAT CTTCGCGCGC GGGCTCACCG ACAGCGGTTC GCTGACGGTC
CAATGGGGCG CCGACGACCG TCGCTCGATC TGTCGAATCG CATACGAGCT GCCTGTCGCG
GAACATCGCC GGCCATCGTC GGGCATTCGG ATCGTCAAGA GCATCTGCGA GCCCGACACC
ACGGCCGCCG GCATTCAATA A
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| Protein sequence | MTPTRLPRRG AADMPHVKPI HLLVAACVAA WSAHGRATTQ AAAESTLAHV EFDGAFLQSR
LGKHVDVSRF AQRNVTAPGV YTTDIHVGPD WIGRYDVRFV AAPDSGDARP CFDRTQLERV
GVDFGKLAPE VLARLDSDGA CLQLEQVVPG ASAAFDFARQ TLRLSIPQAS LVRKARGYVS
PDQWTSGETV GLLGYNFNLY TSKASGHTTQ TQGYLGLNGG VNLGNWRFRH EGSYSWSSRG
ESRYQDIATY LQRDLPSLSS QLVVGESYTS GELFDSTQFR GVRLSTDDRM LPDSLRGYAP
VVRGIANSNA KVTIRQNDVT IYETTVAPGN FEIDDLYPTG YGGDLQVSVA EADGSVHSFS
VPYAAVPMSL RPGIGRYSFV AGTLRNPHGS SQPLFTQATY QRGLTNLLTA YGGVTLAGGY
ASAMLGGAFN TSFGAFGADV THALTSIPGA KRYSGSSVRV SYAKSVDATG TDIALAAYRY
STDGYFGLND AMQARDAARD GRSAQSVWRQ RNRASLALTQ RLGTTGGRIN TTASAVNYWN
RPGSDVNYSV GYTNQFRNIS YSLTATRQRN AGGDMGTLYY ASVTIPLGRE RPMTVSGNVS
RDTLGRTRLQ STLSGSLGED HALSYSVSAN HASGPNSGTD GSANVTYRTR VAEVNASAGA
STDFQQGSLA VRGALVAHRG GITFSQPVSE TFAIVEAPGA AGARVTNAAG VKVDGNGYAV
VPYLTPYSLN TVALDPKGIP MDVELKETSR QIAPRAGAVP LIRFATDTGR AALVQARQAD
GTPLPFGAAV HDETGKEVGV VGQASRIFAR GLTDSGSLTV QWGADDRRSI CRIAYELPVA
EHRRPSSGIR IVKSICEPDT TAAGIQ
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