Gene Bamb_3998 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_3998 
Symbol 
ID4312894 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008391 
Strand
Start bp909981 
End bp911060 
Gene Length1080 bp 
Protein Length359 aa 
Translation table11 
GC content70% 
IMG OID638151840 
Productpeptidase S11, D-alanyl-D-alanine carboxypeptidase 1 
Protein accessionYP_775886 
Protein GI115358748 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1686] D-alanyl-D-alanine carboxypeptidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGACCGGCC TCATCGCGCG CCTGCCTCGC GCCCGGACCT TCCTGATCCT CGCCCTCTCG 
TTCCTGACAC TCGCGTTCGC AACGAACGCG TCCGCGCAGC GCGCGCAGCC GCATCGCACC
GCGGCGCCGC ATGCGCATGC AAAAGTCGTC AAGAAGGCCC CCGCCCACCG CAAGCACAAA
GCCGTCAAGC ACCGCCGCCC GCGCGTCAAG CATCACGCGG TCAAGCGTCA CGCCGCACCC
GCGCCGCAGC ACCGGCGCGC GAAACGCACG AACGCGGTGC GTCCGCGTCC CGCCGCGAAG
CCGCGCCTGC TCGCGAGCTG CGGCTACAGC TCGCGCGCGG TGCGCTCGCT GCACTCACGC
GCGGCCTACG TGCTCGACGT CGACTCCGGC ACGCCGCTGC TGGCCCGCAA CGCACGCGCC
GTGCGGCCGA TCGCGTCGAT CTCGAAGCTG ATGACCGCCG TGGTCGCGCG CGACGCGGAC
CGGCCGCTGA ACGGCGTGCT GCGCGTCACC TCACGCGACC GCGACACGAT CAAGTTCACC
GGTTCGCGGC TGCCGATCGG CGCCGAACTG TCGCGCCGCC AGATGTTCCA TATCGCGCTG
ATGTCGTCGG AAAATCGGGC GGCCGCCGCG CTGAGCCGCG ACTATCCGGG CGGCCGCGCC
GCGTTCGTGA AGGCGATGAA CCGCGAGGCG CGCCGGCTCG GGATGCGTCA AACGCACTTC
CGCGAACCGA CTGGGTTGTC GCCGCACAAC GTGTCCACCG CCGAGGATCT CGCGCGGCTC
GTCGGCGCGG CCGCGCAGGA TCCGCTGATA CGCTACTTCT CGACGGACAC GTCGACCACC
GTGCAGGCCG GCGACGGCGA ACTGGTGTAC GTGAACTCCG ATCCGCTCGT GCGCAACGGC
AGCCTGCCGA TCCGCCTGCA GAAAACCGGC TTCATCAACG AATCGGGGCA CGGCGTCGTG
ATGCGCATGC GCGTGAAAGG CCGCCGCGAA ACGATCGTGC TGCTCGGCGC ACCGACGCGC
GCCGGCGTGT CGAGCGATGC GGTGAAGATC CATCGCTGGC TGAGCTGCTC GATCCAGTAA
 
Protein sequence
MTGLIARLPR ARTFLILALS FLTLAFATNA SAQRAQPHRT AAPHAHAKVV KKAPAHRKHK 
AVKHRRPRVK HHAVKRHAAP APQHRRAKRT NAVRPRPAAK PRLLASCGYS SRAVRSLHSR
AAYVLDVDSG TPLLARNARA VRPIASISKL MTAVVARDAD RPLNGVLRVT SRDRDTIKFT
GSRLPIGAEL SRRQMFHIAL MSSENRAAAA LSRDYPGGRA AFVKAMNREA RRLGMRQTHF
REPTGLSPHN VSTAEDLARL VGAAAQDPLI RYFSTDTSTT VQAGDGELVY VNSDPLVRNG
SLPIRLQKTG FINESGHGVV MRMRVKGRRE TIVLLGAPTR AGVSSDAVKI HRWLSCSIQ