Gene Bamb_3983 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_3983 
Symbol 
ID4312879 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008391 
Strand
Start bp891994 
End bp893241 
Gene Length1248 bp 
Protein Length415 aa 
Translation table11 
GC content67% 
IMG OID638151825 
Productmajor facilitator transporter 
Protein accessionYP_775871 
Protein GI115358733 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00710] drug resistance transporter, Bcr/CflA subfamily 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.134584 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACGCCT CGCTCACTCC GGCGCGCGAA TCGAACTCGC CGCGCTTCCT GTTGTTTCTG 
ATTTGCCTGT TCTCGTCCGC CGGCCAGCTC GCGATCGACA TCTACGTGCC CGCGCTGCCC
GACATGGCGC GCTCGTTCGC GACCACGCCG CAGGCGATCC AGTCGAGCGT GTCCGGCTAC
ATGGCCGCCT ATGCGCTCGG CCAGTTGATC TTCGGCCCGG TGGCCGACGC GTACGGACGC
AAGCGCGTGC TCGCGTTCGG GCTCGTCATC TATACGATCG GCTGCCTGCT GTCGCTCGGC
GCGCCGAACC TGGAGACGTT CATACTGGCG CGCTGCCTGC AGGGCTTCGG GATCGCGACC
ACGAACCTGC TTGCGAAGGC GATCATCACC GACTCGTTCT CGGGCCAGGC GCTGATGCAT
GCGTTCACGT ACATGTCGAT CGCATGGGGG CTCGCGCCGA TCATCGCGCC GGTGATCGGC
GCGCACCTGC AGGAATGGTT CGGCTGGCGC GCATGCCTCG TGTTCCTGCT GGTGTATTCG
CTGGTGATGT GGGCGCTGTG GTGGCATTAC CGGGAAACCT TGCCGAAACC GGTCCATCTC
GAGCCGCGTA CGCTGATCGC GAACGCGGGC AAGGTGCTCG CGAGCCCGGT GTTCCAGAGC
TGCTTCCTCG CGCAGGGGCT GTGCTACAGC ATCCTGCTGG TGTTCAACAT CGTCGGGCCG
TTCATGGTGC AGACCACGCT GCACAAGCCA CCGACCTTCT TCGGTTATCT CGCGCTCGGG
ATCGGGCTGA TGTATTTCCT CGGCGGGCTG TCGAACCGGA TTCACGGGCG CGGGCTGCCG
AGCGCCGAGC AGCGGCTGCG CATCGGCGCG CGCGTGATGG CGGTCGCGGC GGTCGTGATG
CTCGCGCTGG CGCTGACCGT CGGCCTGCGC GTGTGGACGC TCGCGACGCC GGTGCTCGTG
ATGGGCCTCT GCGCGGGCGC GATGTATCCG ACGCTGATGG CGAAGGGCAA TTCGCTGTTT
CCGCATATCG CGGGGCTGAC GAGCGCGATT CTCGGGTGCG CGCTGCTGCT CGTGTCGTCC
GCGATGATGG GGCTGGCTGG CTTCGTGTCG GTGCAGGTGC TGACGCCGCT CGCGGTGTTC
TTCGTCGCGC TGTCGTTCAT CGTCGTGTGG ATGGTGACGA AGCTGCTGCG CTACCTGAGC
CAGCAGCAGG CCGCGAGCGT CGCTTGCGGG AGCGGGGAGG CGGCGTAA
 
Protein sequence
MNASLTPARE SNSPRFLLFL ICLFSSAGQL AIDIYVPALP DMARSFATTP QAIQSSVSGY 
MAAYALGQLI FGPVADAYGR KRVLAFGLVI YTIGCLLSLG APNLETFILA RCLQGFGIAT
TNLLAKAIIT DSFSGQALMH AFTYMSIAWG LAPIIAPVIG AHLQEWFGWR ACLVFLLVYS
LVMWALWWHY RETLPKPVHL EPRTLIANAG KVLASPVFQS CFLAQGLCYS ILLVFNIVGP
FMVQTTLHKP PTFFGYLALG IGLMYFLGGL SNRIHGRGLP SAEQRLRIGA RVMAVAAVVM
LALALTVGLR VWTLATPVLV MGLCAGAMYP TLMAKGNSLF PHIAGLTSAI LGCALLLVSS
AMMGLAGFVS VQVLTPLAVF FVALSFIVVW MVTKLLRYLS QQQAASVACG SGEAA