| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_3975 |
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| Symbol | |
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| ID | 4312871 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008391 |
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| Strand | - |
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| Start bp | 877310 |
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| End bp | 878419 |
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| Gene Length | 1110 bp |
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| Protein Length | 369 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 638151817 |
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| Product | porin |
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| Protein accession | YP_775863 |
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| Protein GI | 115358725 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0863036 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0262262 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTTTGC GACTCAAACA TCTAGCATGG CTGATCGCGG CCGCCGCACC GGCGGCCGCG
TCCGCACAAA CCAGCGTGAC GCTGTACGGC CGTATCGACG GCGGCGTCGA ATACCTGAAC
CACATCGCGA CGCCGAACGG CAGTTCGACG CGCTGGAGCG CGGAAGGCGG CGACTGGGGC
ACCAGCATGT TCGGCCTGAA GGGTTTCGAG GATCTCGGCG GCGGGATGTC GACCGTCTTC
AACCTGGAAA CCGCGTTCCA GGTGATGAAC GGCACGACGG GCGGTGGACG TCTGTGGTCA
CGCCGCGCGT ATGTCGGGCT GAAGAGCGAC ACGTGGGGCC AGCTGCAGGC CGGCCGCAAC
CTGTTCATCG ACAGCGACGG CGTGTGGGAA TTCGACCCGT TCGTGCAGCA GGCGTTTTCG
TCGGCGTCGC TCGTGCGCGG CCGCAACTGG CAGCAGAGCA GCAACAACAT CGAATATCAC
AGCCCGGTGA TCGGCGGCTT CGACGTGCAG GCGCAGTATG CGTTCGGCAA CCAGTCGCGC
GGCTTCAACT ACGGCGCGGC CGACGATTTC GGCCGCTCGG ACGGGATCAT GATCTCGTAC
CACTCGCCGG TGCTCGACGT GCGCGGCATT TACGACGAGC TGCGCGACAA CAACGGCAAG
TTCAGCAACA TCTTCACCGC GTCGCGCGAG TATTTCGTCG GCGCGAACGT GAAGGTGTCG
AAGTTCAAGA TCCAGGGCGC GTATACGCAT TACCAGGCGC CGGACAGCCC GGCTGGTGTC
GCCGATCGCG CCGATCATTA CTGGCTCGGT GCGACTTATA CGGCGACGCC GCAGTGGGCC
GTGACGGGCG GCGGGTATTA CGTGAAGGTG GGCGATGGCG GCGGCGATGC GTCGCACGAT
CCGTCAGGCC ACGCGATTAT GTATGTGCTC GGCACAACGT ACAACTTGTC GAAGCGGACG
TTCCTGTATG GGACGGTTGC TTATGTGCGG AATGGCGGGA ATTCGAACTT CTCGCTGATT
GCGTCGCCGC GCGATGCGAC GTCGGGGACG AGTCCGATGA CGGGCGAGTC GCAGACGGGG
GCGTATGTGG GGATGATGCA TACGTTCTGA
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| Protein sequence | MTLRLKHLAW LIAAAAPAAA SAQTSVTLYG RIDGGVEYLN HIATPNGSST RWSAEGGDWG
TSMFGLKGFE DLGGGMSTVF NLETAFQVMN GTTGGGRLWS RRAYVGLKSD TWGQLQAGRN
LFIDSDGVWE FDPFVQQAFS SASLVRGRNW QQSSNNIEYH SPVIGGFDVQ AQYAFGNQSR
GFNYGAADDF GRSDGIMISY HSPVLDVRGI YDELRDNNGK FSNIFTASRE YFVGANVKVS
KFKIQGAYTH YQAPDSPAGV ADRADHYWLG ATYTATPQWA VTGGGYYVKV GDGGGDASHD
PSGHAIMYVL GTTYNLSKRT FLYGTVAYVR NGGNSNFSLI ASPRDATSGT SPMTGESQTG
AYVGMMHTF
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