| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_3934 |
|---|
| Symbol | |
|---|
| ID | 4312830 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | - |
|---|
| Start bp | 825164 |
|---|
| End bp | 829357 |
|---|
| Gene Length | 4194 bp |
|---|
| Protein Length | 1397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 638151776 |
|---|
| Product | molybdopterin oxidoreductase |
|---|
| Protein accession | YP_775822 |
|---|
| Protein GI | 115358684 |
|---|
| COG category | [P] Inorganic ion transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0369] Sulfite reductase, alpha subunit (flavoprotein)
[COG3383] Uncharacterized anaerobic dehydrogenase |
|---|
| TIGRFAM ID | [TIGR01931] sulfite reductase [NADPH] flavoprotein, alpha-component |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCCA CCCCCATCAA GAGCGTGTGC CCGTACTGCG GTGTCGGCTG CGGAATGGTG
CTGCACGTCG AGGATGGCGA GGTCGTCAAG GTGTCCGGCG ACTCCGAGCA TCCGACCAAC
TTCGGGCGGC TGTGCACGAA GGGCTCGTCC GCGCACGTCG CGTTGCGCCG CTCCGGGCGG
CTCGATCGCA CGTTCGTGCG GCGCGCGCGG GAGGACGATC TCGTGCCGCT GCCGGCCCGC
GACGCGATCG CCGAAACCGC GCGGCGGCTG CGCGCGGTGC TCGACACGCA CGGGCCCGAT
GCGCTGTCGT TCTACGTGTC GGGGCAGATG TCGATCGAGG CGCAATACCT CGTGAACAAG
CTCGCGAAGG GCTTCGTCGG CACCAACAAC ATCGAGTCGA ACTCGCGCCT CTGCATGGCG
AGCGCGAGCA CCGGCTACAA GCAGTCGCTC GGCGCGGACG GCCCGCCCGG GTCGTACCAG
GACTTCGATC GCGCGAACCT GTTCTTCGTG ATCGGCGCGA ACATGGCCGA CTGCCACCCG
ATCCTGTTCC TGCGGATGAT GGATCGCGTG AAGGCCGGCG CGAAGCTGAT CGTCGTCGAT
CCGCGCCGCA CCGGCACCGC CGACAAGGCC GACCTGTTCC TGCAGATCCG GCCTGGCACC
GATCTCGCGC TGACCAACGG ACTGCTGCAC CTGCTGCACG CGAACGGCCG CACCGATGCC
GCGTTCATCG ACGCGTACAC CGAAGGCTGG GACGCGATGC CCGCGTTCCT CGCCGACTAC
ACGCCTGAGC GCGTCGCCGA AATCACGGGG CTCGCCGAAG CCGACATCCG CACGGCCGCG
CAATGGATCG GCGACGCGCA GGAATGGATG AGCTGCTGGA CCATGGGGCT CAACCAGAGC
ACGCACGGCG TGTGGAACAC CAACGCGATC TGCAACCTGC ATCTCGCGAC GGGCACGATC
TGCCGCCCGG GCAGCGGGCC ATTTTCGCTG ACCGGCCAGC CGAACGCGAT GGGCGGGCGC
GAGATGGGCT ACATGGGCGC CGGCCTGCCG GGCCAGCGCT CGGTGCTGTC CGACGACGAC
CGGCGCTTCG TCGAGAACCT GTGGCGCGTG CCGGCCGGCA CGCTGCGCAA GGAAACCGGC
AACGGCACGG TCGACCTGTT CGAGCGGATG GCGGCCGGCG ACATCAAGGC GTGCTGGATC
GTCTGCACGA ATCCGGTCGC GACCGTGCCG AACCGGCAGA ACGTGATCGC GGGGCTGCAG
GCCGCTGAGC TGGTGATCGC GCAGGACGCG TTCCTCGACA CCGAGACCAA CCGCTACGCG
GACATCCTGC TGCCCGGCGC GCTGTGGGCC GAGGGCGACG GCGTGATGGT CAACTCCGAG
CGCAACATGA CGCTGATGCG CGCCGCGATC GCGCCGCCCG GCGACGCGCT GCCCGACTGG
CGCATCGTCG CGGAGGTCGC GCGCGCGATG GGCTTCGGCG ATGCGTTCGA CTATGCGTCG
GCGGCCGACG TGTTCGACGA GATCGTGCGC TTTTCGAATC CGGCGACCGG CTACGACCTG
CGCGGCGCGA GCCATGCGGC GCTGCGCGAC GGCCCGGTGC AATGGCCGGT CGCGCCGGGC
ACCGCGCGCG AGCGGCACCC GATCCGCTAC CTGAACGACG GCGTGAGCCA GACGCCGCGC
GCGGCCGACG GCGGGCACGA TGCGCCGCGC ATCGCGTTCC CGACGCCGTC GGGCAAGGCG
CGCTTCTTCG CGCGGCCACA CGTCGCGCCG GCCGAACTGC CGGACGACAC GTTCCCGATC
GTGCTGAACA CCGGGCGGCT GCAGCATCAA TGGCACACGA TGACGAAGAC GGGCAAGGTG
CCGATGCTGA ACAAGCTCAA TCCGCGTCCG TTCGTCGAGC TGCATCCGGA CGACGCGGGC
GCGCTCGGCA TCGCGACGAA GGACAGCGTC GAGATCCGTT CGGCGCGCGG CCGCGCGGTG
CTGCCGGCCG TCGTGACTGA GCGCGTGCAG CGCGGCAACT GCTTCGCGCC GATGCACTGG
AACGACGTGT ACGGCGACGA CCTGTGCATC AACGCGGTGA CGAACGACGC GATCGATCCG
GAATCGCAGC AACCCGAATT GAAATACTGC GCGGTCGCAC TGACGCGCGT CGACACGGAC
GCGTTCGCGT CCGCCGACGA CGACACGGCG CGGCCCGATG CCAGCGCGGC CGATGCCGAT
GCGCGGCCCG CGCCGGCATC GGTGCAGATC ACGGCTTCAC AGGAATCCGA CATGGCAGAC
CTCGACACTT TCGCGGCGGC GCTCGGCGTG GCCGATCTCG CGCCGCCGCC GCTCACCGAG
GCGGAGCGCC TGTACGTGGC CGGCCTCGTC AGCGGGCTGA AGGCGAGCGC GGGGCGGCGC
GAAGGCGGCG TGCCGGTGCT GCCGGCCGGC GCGCCGCTCG CGCCGCCGGT GCGGTTCTGG
CTCGACGGGA TGCTCGCGGG GCTGTTCAGC CGCTCGCTGC CCGCCCACCC GGCGGAGGGT
GCGGCGCCCG CGCTGCCGGC CGAGGCCGCC GCGCCCGGCG GCGTGCGGAT CGTGCGCACG
CGTCCGAAGG TCGTGCTGCT GTGGGCGTCG CAGACGGGCA ACATCGAATC GCTGACCGAG
GACTACGCGA CGCAGCTGAT GAATGCGGGC TTCGAGATCC GCACCGCGTG CATGTCCGAC
TATCCGGTCG CGTCGCTGGC TGGCGCGCAA TACGTGCTGC TGATGACGAG CACGTTCGGC
GACGGCGATG CGCCCGACAA CGGCAGCGAG TTCTGGGATG CGCTGCAGGC CGACGGCGCC
GCGCGCCTCG ACGGCGTGCA CTTCGCGGTG CTCGCGTTCG GCGATCGCAA CTACGACCAG
TTCTGCGGCC ACGGCCGCCG GCTCGATGCA CGGCTCGCGG AGCTCGGTGC TGCGCGCTTG
TGCGCACGCG TCGATTGCGA CGTCGAGTTC CAGCGCGAGG CGGATCAGTG GCTCGAACGC
GTGGTCGCCC GGATCAAGGA TGCGGATGCG GCGCTGCACG CGGTGCCGTC CGCCGGATTG
AGCGCGTCGG GGCTGCTGCC GACCAAGGCG CGTCCGGCGC CGTCGAAGCT CGTCGCGAAC
CTGCGGCTCA ACCGGCCGGG CGCCGCGAAG GACACGCGCT ACGTGTCGCT GTCGACCGAA
GGCGCGAACC TCGAATACGA AGCCGGCGAC GCGCTCGGCG TGTGGCCGAC CAACTGCCCG
GAGCTGGTCG ACGAGTTGCT GTCGGTCACC GCGCTGAAGG CCGACGCGCC GGTGTCGATC
GACGGCGTCG GCGACATGCG CCTGGGCGAG GCGCTGGCGC GCCACTTCGA CATCACGCGC
CCGCACCCCG ATACGCTCGC GTTCATTGCA TCGCGCAGCG CGAACGGCGC GCTGAAGGCG
CTGCTCGGCG ACGATCGCAA GGCCGACCTG AAGCAATGGT TGTGGGGGCA ACAGCTGGCG
GACGTGCTGC ACGAGTTTCC GGTCGAGCTG TCGGGCGCGG AGCTGGTCGC GATGCTGAAG
CGGCTGCAGC CGCGGCTGTA TTCGATCGCG TCGAGCCCGA GCGCGCACCC GGGCGAGATC
CACCTGACGG TGTCGGCCGT GCGCTATCAC AACGGCCGGC GCGCGCGCAA AGGCGTCGCG
TCGACGTTCC TCGCCGATCG CGCGGACGAC GGACGCGTGC CGGTGTTCGT GCAGAAGTCC
GCGCATTTCC GGCCGCCGGT GAACGGCGAC GTGCCGGTCG TGATGGTCGG CCCCGGCACG
GGCGTCGCGC CGTTCCGCGG CTTCCTGCAC GAGCGGCAGG CGCGCGGCGC GCGCGGACGC
AACTGGCTGT TCTTCGGCGA GCAGCATGCG CAGACCGACT TCTACTACGG CGACGAGCTC
GAAGCGATGC GCGACAGCGG CTTCCTGACG CGGCTCGATC TCGCGTTCTC GCGCGACCAG
GCCGACAAGA TCTACGTGCA GGACCGGATG CGCGAGCAGG GCGCCGAGCT GTACAGGTGG
CTGGAGGAGG GCGCGCACTT CTACGTGTGC GGCGACGCCG CGCGGATGGC GAAGGATGTC
GATACCGCGC TGAAGGCGGT CGTCGCCGAG CACGGCGGGA TGTCGGACGA AGCCGCGAAC
GATTACGTCG CGCGGCTCGC GAAGGCGCGG CGCTACATGC GGGACGTGTA CTGA
|
|---|
| Protein sequence | MSATPIKSVC PYCGVGCGMV LHVEDGEVVK VSGDSEHPTN FGRLCTKGSS AHVALRRSGR
LDRTFVRRAR EDDLVPLPAR DAIAETARRL RAVLDTHGPD ALSFYVSGQM SIEAQYLVNK
LAKGFVGTNN IESNSRLCMA SASTGYKQSL GADGPPGSYQ DFDRANLFFV IGANMADCHP
ILFLRMMDRV KAGAKLIVVD PRRTGTADKA DLFLQIRPGT DLALTNGLLH LLHANGRTDA
AFIDAYTEGW DAMPAFLADY TPERVAEITG LAEADIRTAA QWIGDAQEWM SCWTMGLNQS
THGVWNTNAI CNLHLATGTI CRPGSGPFSL TGQPNAMGGR EMGYMGAGLP GQRSVLSDDD
RRFVENLWRV PAGTLRKETG NGTVDLFERM AAGDIKACWI VCTNPVATVP NRQNVIAGLQ
AAELVIAQDA FLDTETNRYA DILLPGALWA EGDGVMVNSE RNMTLMRAAI APPGDALPDW
RIVAEVARAM GFGDAFDYAS AADVFDEIVR FSNPATGYDL RGASHAALRD GPVQWPVAPG
TARERHPIRY LNDGVSQTPR AADGGHDAPR IAFPTPSGKA RFFARPHVAP AELPDDTFPI
VLNTGRLQHQ WHTMTKTGKV PMLNKLNPRP FVELHPDDAG ALGIATKDSV EIRSARGRAV
LPAVVTERVQ RGNCFAPMHW NDVYGDDLCI NAVTNDAIDP ESQQPELKYC AVALTRVDTD
AFASADDDTA RPDASAADAD ARPAPASVQI TASQESDMAD LDTFAAALGV ADLAPPPLTE
AERLYVAGLV SGLKASAGRR EGGVPVLPAG APLAPPVRFW LDGMLAGLFS RSLPAHPAEG
AAPALPAEAA APGGVRIVRT RPKVVLLWAS QTGNIESLTE DYATQLMNAG FEIRTACMSD
YPVASLAGAQ YVLLMTSTFG DGDAPDNGSE FWDALQADGA ARLDGVHFAV LAFGDRNYDQ
FCGHGRRLDA RLAELGAARL CARVDCDVEF QREADQWLER VVARIKDADA ALHAVPSAGL
SASGLLPTKA RPAPSKLVAN LRLNRPGAAK DTRYVSLSTE GANLEYEAGD ALGVWPTNCP
ELVDELLSVT ALKADAPVSI DGVGDMRLGE ALARHFDITR PHPDTLAFIA SRSANGALKA
LLGDDRKADL KQWLWGQQLA DVLHEFPVEL SGAELVAMLK RLQPRLYSIA SSPSAHPGEI
HLTVSAVRYH NGRRARKGVA STFLADRADD GRVPVFVQKS AHFRPPVNGD VPVVMVGPGT
GVAPFRGFLH ERQARGARGR NWLFFGEQHA QTDFYYGDEL EAMRDSGFLT RLDLAFSRDQ
ADKIYVQDRM REQGAELYRW LEEGAHFYVC GDAARMAKDV DTALKAVVAE HGGMSDEAAN
DYVARLAKAR RYMRDVY
|
|---|
| |