Gene Bamb_3824 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_3824 
Symbol 
ID4312720 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008391 
Strand+ 
Start bp694137 
End bp694757 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content64% 
IMG OID638151666 
ProductTetR family transcriptional regulator 
Protein accessionYP_775712 
Protein GI115358574 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.472754 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATGCAT CTTCAGGCGC GGAAGTCCGC CATCACATCC TGAATACCGC GAAGCCGATC 
ATGCTCCAGA AGGGGTTCTC GGCGGTCGGT CTGAACGAGA TTCTCGCCGC GGCGGGCATC 
CCGAAGGGCT CGTTCTACCA TTACTTCGGC TCGAAGGAAG CATTCGGCGA GGCGCTGCTC 
GAGTCGTATT TCGAAGGCTA TCTCGCGTAT CTCGACAACC TGTTCAAGCA TCAGGCCGGC 
ACGGGCGCGC AGCGCCTGAT GATGTACTGG AACAACTGGC TGCAGATGCA GTGCGCGGAC 
GATCCGGAAG GCAAGTGCCT CGCGGTCAAG CTGGGTGCGG AGGTGTCCGA CTTGTCGGAG 
CCGATGCGCG CGGTGCTGCG GCGCGGCACG AGCCAGATCA TCGAGCGGCT CGCGGGCGGG 
ATCGAGGCCG GGCTGGCCGA CGGTTCGCTG CGCGGCGTCG ACGATCCCGC GCATACGGCC 
GCGATCCTGT ACGAGCTTTG GCTTGGCGCA ACGCTGCTGG AGAAGATCCA CCGCAACCGC 
CAGCCGCTCG AGCGCGCGAT GCTCGAAACC CGACGGATGC TGAACCTGCC GCCCGTCGAG 
CCAGACGGAG CGCAGTCATA A
 
Protein sequence
MNASSGAEVR HHILNTAKPI MLQKGFSAVG LNEILAAAGI PKGSFYHYFG SKEAFGEALL 
ESYFEGYLAY LDNLFKHQAG TGAQRLMMYW NNWLQMQCAD DPEGKCLAVK LGAEVSDLSE 
PMRAVLRRGT SQIIERLAGG IEAGLADGSL RGVDDPAHTA AILYELWLGA TLLEKIHRNR 
QPLERAMLET RRMLNLPPVE PDGAQS