Gene Bamb_3793 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_3793 
Symbol 
ID4312689 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008391 
Strand
Start bp661977 
End bp663971 
Gene Length1995 bp 
Protein Length664 aa 
Translation table11 
GC content72% 
IMG OID638151635 
Productmulti-sensor hybrid histidine kinase 
Protein accessionYP_775681 
Protein GI115358543 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.191798 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGGACCT TTACCCGTGA GCTGTTTCGG CAGGGCATAT GGGTCGTGCT GGCCGTCGGG 
GTGGCGGCCG TGCTGCAGGC GTGGGCGATT CACGTCATCG GCATGCACGA ACCGTTCGCG
CCGCTGCCTT TCTACGCCGG TGTCGCGGCT GCGGCCTGGC TGACGTCGTT TGCCGGCGGC
GTGGCCGCGA GCGCCTTGAG CCTCGCCGTG ATCGGCGCCT TGTGGTGGCG CAATGCGCCG
CTGCCCGATC TCCTCTCGCA AGCCGGCGCT TTCGTCGCGA TCAGCTTCGT CGAGTGCGTG
CTCGTGATGG CCGTCAAGCC GCTGCTCGCC AACGACCGGC TGCGCGGCGC CGAGGATGCG
GAAGAGGACG GCGCGCGCTC GCCGCGCCGC GAACCCGAAC CTGGAACCCT GGCGCGCTCG
GTCGACGACA CAGTGCTGCG CCGCGTGGTC GATGCATCGC CCGACGCGAT CGTCGGCGTC
GATGTCGCAC GGCGCATCAC GAGCTGGAAC CTGGCCGCGC GGCGCCTCTT CGGCATCGAC
GCGGCGGCGG CGATCGGGCA CGACGTCACG ATGCTGATCG CGCCGCGCTG GTTGCGATTA
CATCCGGTGC CCGCATCGTT CGCGGACGCG GGCGCGCCGG CCGGCCCGCT CGACATCCTG
TGCCTGCGCC GCGACGGCAG CCGCTTTCGC GCGACCTTCA CGGCGTCGCC GATCGTCGAC
GCGCAAGGCA ATTGCACCGG CTTGTCGATG ACGCTGCGCG AGGCGCGCGA ACGCCGCCGC
TGCGAGCAGC GCGATCTGCG CATGTTGCGC GGCGCGCGCG ACGCGCGCGT GCAGGCCGAC
GAGTCGAACC GGATGAAGGA CGAACTGCTG GCCACCGTGT CGCATGAACT GCGCACGCCG
CTGAACGTGA TCTACGGCTG GGTCGAGGTG CTGCGCAGCG GCGAGGGGCA GGGCTTCGCG
CATCAGGCGA TCGACGCGAT CGATCGCAGC GCGCGCTCGC TGTCGCGGAT GGTCGGCGAC
CTGCTCGACG CGTCATCGCT CGCGACGGGC CGGGTGCGGC TCGAACGCAC GCCGGTCGAC
CTCGTGCGGA TCGTGCAGGA GGCCGTGCGC GAAATCGGCG ACACCGCGCA GGCGAACGGC
CTCGAGCTGT CGACCGAGTG CGCGATGCCC AGCTGCGTGA TCGCCGCGGA CGCCGAGCGT
CTGCGCCAGT TGCTGTCGAA CCTGTTGTCG AATGCGATCA AGTTCACGCC GCCGGGCGGG
CGCATCAAGG TGTCGTTGAA CCCGGCCGGC GCGCGCGTGC GGCTGTCGGT CGCCGATACG
GGTCAAGGTA TTTCCGCGGA ACGCCTGCCG CACCTGTTCG ATACGTTCAG CCGGCCGGAA
GGCGCGCCCG CGTTGCCGAA ACGCGGTTTA GGGCTCGGCT TGTCGATCGT GCGCAACATC
GCGCGGCTGC ACGGCGGCGA GGTCGCGGCG GCGAGCGAAG GCGCCGGGCG CGGCACGACC
GTGACCGTCA TGCTGCCGGC GGATCTGGGT GCCGACGATA CGACGACCGG CCATCCGGTA
CGGCCGAGCG GGGCGTCGAC GGCGGTCGCG CTCGACGGCC GGCGCGTGCT GGTGGTCGAC
GACGACGCGA CGTCGCGCGC CAGCCTCGCG GCCGCGCTGG AAACGCTGGG CGCCGAGGTG
TCGACCGCGC AATCGGGACA CGACGCGCTC GACGTGGTGG CGCAGCAGCA CCCGAGCGTC
GTGCTGTCCG ATCTCGCGAT GCCGGACGGC GACGGCTTCT GGCTGCTTGA CCACATTCGC
GACTTGCCGG ACGGCGGCGG GCGCCTGCCC GTCGTCGCGG TGACCGCGCA TGCGGGCACG
GCGGACCGCA GCCGCGTGAT GGCCGCCGGC TTCGACGCGT ATCTGTGCAA GCCGGTCGAC
GTTCCGACGC TGGCCAGCGT GATCGTCGAC GTATCGCCCG CCGACGCGAC GGGTGGCACC
GGGCGGCGCC ACTGA
 
Protein sequence
MRTFTRELFR QGIWVVLAVG VAAVLQAWAI HVIGMHEPFA PLPFYAGVAA AAWLTSFAGG 
VAASALSLAV IGALWWRNAP LPDLLSQAGA FVAISFVECV LVMAVKPLLA NDRLRGAEDA
EEDGARSPRR EPEPGTLARS VDDTVLRRVV DASPDAIVGV DVARRITSWN LAARRLFGID
AAAAIGHDVT MLIAPRWLRL HPVPASFADA GAPAGPLDIL CLRRDGSRFR ATFTASPIVD
AQGNCTGLSM TLREARERRR CEQRDLRMLR GARDARVQAD ESNRMKDELL ATVSHELRTP
LNVIYGWVEV LRSGEGQGFA HQAIDAIDRS ARSLSRMVGD LLDASSLATG RVRLERTPVD
LVRIVQEAVR EIGDTAQANG LELSTECAMP SCVIAADAER LRQLLSNLLS NAIKFTPPGG
RIKVSLNPAG ARVRLSVADT GQGISAERLP HLFDTFSRPE GAPALPKRGL GLGLSIVRNI
ARLHGGEVAA ASEGAGRGTT VTVMLPADLG ADDTTTGHPV RPSGASTAVA LDGRRVLVVD
DDATSRASLA AALETLGAEV STAQSGHDAL DVVAQQHPSV VLSDLAMPDG DGFWLLDHIR
DLPDGGGRLP VVAVTAHAGT ADRSRVMAAG FDAYLCKPVD VPTLASVIVD VSPADATGGT
GRRH