| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_3730 |
|---|
| Symbol | |
|---|
| ID | 4312626 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | + |
|---|
| Start bp | 588318 |
|---|
| End bp | 589835 |
|---|
| Gene Length | 1518 bp |
|---|
| Protein Length | 505 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638151572 |
|---|
| Product | methylmalonate-semialdehyde dehydrogenase |
|---|
| Protein accession | YP_775618 |
|---|
| Protein GI | 115358480 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01722] methylmalonic acid semialdehyde dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACACG ACAGCAATGT GACCTCCACC GTCGGCCACC TGATCGACGG CAAGCGCGTC
GACGGCGGCA GCCGCGTGCA GCCGGTGTTC GACCCGGCGA CCGGCGAATC GCACAAGAGC
GTCGCGCTCG CCGACAAGCT GACCGTCGAA GCCGCGATCG CGTCCGCGCA GGCCGCGTTC
CCGGCGTGGC GCAACACGCC GCCGCTGAAG CGCGCCCGCG TGATGAGCCG CTTCAAGACG
CTGCTCGAGG AGCACGCGGA CGAACTGTGC GCGCTGATCA CCGCCGAACA CGGCAAGGTG
CTCGCCGACG CGATGGGCGA GCTGCAGCGC GGGATCGAGA ACGTCGAATA CGCGACCTAC
GTGCCCGAGC TGCTGAAGGG CGAACACAGC AAGAACGTCG GCCCCGCGAT CGATTCGTGG
AGCGAGTTCC AGGCGCTCGG CGTGGCCGCC GGCATCACGC CGTTCAACTT CCCGGTGATG
GTGCCGCTGT GGATGTGGCC GATGGCCGTC GCGTGCGGCA ACACGTTCGT GCTGAAGCCG
TCCGAGCGCA CGCCGTCGTC GACGCTGCGC ATGGCCGAGC TCGCGCTCGA GGCCGGCCTG
CCGCCGGGCG TGCTGAACGT CGTGAACGGC GACAAGGAGG CGGTCGACAC GATCCTGACC
GACGCGCGCG TGAAGGCGGT GAGCTTCGTC GGCTCGACGC CGATCGCCGA ATACATCTAT
TCGACCGGCT GCGCGCACGG CAAGCGCGTG CAGGCGCTCG GCGGCGCGAA GAACTTCGCG
GTGGTGATGC CCGACGCCGA CATCGGCAAC GCGGTGAACG CGCTGATGGG CGCCGCATAC
GGTTCGTGCG GCGAGCGCTG CATGGCGATT CCGCTGGTCG TCGCGATCGG CGATGAAACG
GGCGACAAGG TGGTCCAAGG CCTGAAGGCC GAGATCGAGA AGATGAAGGT CGGCCCGGGC
AACGGTGCCG GTGTCGACAT GGGGCCGCTC GTCACGAAGC AGCATTTCGA CAAGGTGACG
GGCTTCGTCG AAGCCGGCGT GGAAGCGGGC GCGACGCTCG TCGTCGACGG CCGCGGCGTG
AAGGTCGACG GCCACGACGG CGGCTACTAC CTCGGCCCGT GCCTGTTCGA TCACGTGAAG
CCCGGTATGC CGATCTACCA GCACGAGATC TTCGGGCCGG TGCTCGGCGT GATCCGCCTG
AAGTCGCTCG ACGACGCGAT GGCGCTGATC GATGCGCACG AATACGGGAA CGGCACGTGC
CTGTTCACGC GCGACGGGGA AGCTGCGCGC TACTTCAGTG ACAACATCCA GATCGGCATG
GTCGGCATCA ACGTGCCGCT GCCGGTGCCG GTCGCCTACC ACTCGTTCGG CGGCTGGAAG
CGCTCGCTGT TCGGCGACCT GCACGCGTAC GGCCCGGATG CGGTGCGGTT CTACACGAAG
CGCAAGACGA TCACGCAGCG CTGGCCGTCG GCCGGCGTGC GCGAAGGGAC GGTGTTCAGC
TTCCCGTCGA ACCGCTGA
|
|---|
| Protein sequence | MKHDSNVTST VGHLIDGKRV DGGSRVQPVF DPATGESHKS VALADKLTVE AAIASAQAAF
PAWRNTPPLK RARVMSRFKT LLEEHADELC ALITAEHGKV LADAMGELQR GIENVEYATY
VPELLKGEHS KNVGPAIDSW SEFQALGVAA GITPFNFPVM VPLWMWPMAV ACGNTFVLKP
SERTPSSTLR MAELALEAGL PPGVLNVVNG DKEAVDTILT DARVKAVSFV GSTPIAEYIY
STGCAHGKRV QALGGAKNFA VVMPDADIGN AVNALMGAAY GSCGERCMAI PLVVAIGDET
GDKVVQGLKA EIEKMKVGPG NGAGVDMGPL VTKQHFDKVT GFVEAGVEAG ATLVVDGRGV
KVDGHDGGYY LGPCLFDHVK PGMPIYQHEI FGPVLGVIRL KSLDDAMALI DAHEYGNGTC
LFTRDGEAAR YFSDNIQIGM VGINVPLPVP VAYHSFGGWK RSLFGDLHAY GPDAVRFYTK
RKTITQRWPS AGVREGTVFS FPSNR
|
|---|
| |