| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_3687 |
|---|
| Symbol | |
|---|
| ID | 4312583 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | + |
|---|
| Start bp | 537227 |
|---|
| End bp | 538444 |
|---|
| Gene Length | 1218 bp |
|---|
| Protein Length | 405 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 638151529 |
|---|
| Product | porin |
|---|
| Protein accession | YP_775575 |
|---|
| Protein GI | 115358437 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.413134 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.481699 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGC GCGTCGCTTT CGCCATGACG GCAGCGGGTC TCGCAGCCGC TACCGCAGCC
CACGCCCAGA GCAGCGTCAC CCTGTACGGT ATCGTCGATA ACGCAATCGC ATACCAGAAC
AACTCGTCGG CAACCGGCGC GACCACGGGT GGTCACTCGA AGGTTCAGAT GGCCACCGGC
ATTTGGGCGG GCAGCCGCTT CGGCCTGAAG GGCAGCGAAG ACCTCGGCGG CGGCACGAAG
GCGATCTTCC AGTTGGAAGC CGGCTTCAAC GCGAACAACG GCTCGTCGCA ATGGACGAAC
GGCATCTTCA CGCGTCAGGC ATGGGTCGGC CTGAGCAACC AGACGTACGG TACGCTGACG
GCAGGCCGTC AGTACACCGC GTACTACACG CTGCTGTCGC CGTACAGCCC GACGACCTGG
CTGACCGGCT ACTACGGCGC GCACCCGGGT GATATCGATT CGCTGGATAC CAGCTACCGC
GCGAACAACT CGCTCGTCTA CATGTCGCCG AAGTTCTACG GCTTCACGGT CGGCGGTTCG
TACTCGTTCG GCGGCGTCGC AGGCAGCGTG AACCGCGGCT CGACGTGGAG CGCGGCGATC
CAGTACCTGA ACGGCCCGGC AGGCATCGCG GTCGGTTTCC AGCGTATCAA CAACGCGACG
CTCGGCGGCG GTGTGTGGGG CGCGAACTCG ACCGCGCAGA ACGGTCTGGA CACGAGCGGC
AACGGTGCGG AACAGGCCGT GTCGTCGATC AACAACGGCT ACCGCACGGC ACAGGCGCAA
CAGCGTCTCG CGGTGACGGC AGGCTATCAG TTCACGCCGG CATGGGACGT TTCGGTTTCG
TACTCGAACG TGCAATACAT CCCGGGTACG CTGTCGGGCT TCCGGAACAC GGCAATCTTC
AACACGGCAG GCGCCGTGCT GCACTGGAAG GCAGCGCCGC AGTGGGACTT CGCGGCAGGC
TACTCGTACA CGCGTGCGAC CCAGTCGAAC GGCATCTCGA GCGCGGCCAA GTACCATCAG
GTCACGCTGT CGCAGTACTA CAGCCTGTCG AAGCGCACGG GCCTGTACGC AGTTGAGGCT
TATCAGCACG CGAGCGGCAA CACGCTCACC CCGACGGGCG GCGTGATCCT CGCGACGACG
TCGACGGGCG ACGGCGTGGG CGCAGGTTCG AAGCAGAACC AGATCGCGGC CGGCGTCGGC
CTGATCCACC GCTTCTAA
|
|---|
| Protein sequence | MKKRVAFAMT AAGLAAATAA HAQSSVTLYG IVDNAIAYQN NSSATGATTG GHSKVQMATG
IWAGSRFGLK GSEDLGGGTK AIFQLEAGFN ANNGSSQWTN GIFTRQAWVG LSNQTYGTLT
AGRQYTAYYT LLSPYSPTTW LTGYYGAHPG DIDSLDTSYR ANNSLVYMSP KFYGFTVGGS
YSFGGVAGSV NRGSTWSAAI QYLNGPAGIA VGFQRINNAT LGGGVWGANS TAQNGLDTSG
NGAEQAVSSI NNGYRTAQAQ QRLAVTAGYQ FTPAWDVSVS YSNVQYIPGT LSGFRNTAIF
NTAGAVLHWK AAPQWDFAAG YSYTRATQSN GISSAAKYHQ VTLSQYYSLS KRTGLYAVEA
YQHASGNTLT PTGGVILATT STGDGVGAGS KQNQIAAGVG LIHRF
|
|---|
| |