Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_3586 |
Symbol | |
ID | 4312482 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008391 |
Strand | + |
Start bp | 409707 |
End bp | 411503 |
Gene Length | 1797 bp |
Protein Length | 598 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 638151428 |
Product | type I secretion system ATPase |
Protein accession | YP_775474 |
Protein GI | 115358336 |
COG category | [R] General function prediction only |
COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.581333 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTATCAAC TCATCAGGCG CCATCTGGTG ATCGCTGCCG CGTTCGGTAT CGCATCAAAT TTGCTGCTGC TGACGCCGAC CATCTACCTG CTGCAGGTCT ACGACCGCGT GCTACCGAGC CAGAGTATTC AAACGCTGCT GATGTTGATG GCCTTCATGG CGATCACACT TGGGATGAAT ATCTGCGTCG ATATTGCCCG CAGCCGGATC TTGTCGGACC TGGGCGTGCG AATCGGCAAC CGGCTCGAGC GACTCGCGTT GCAGGCGCAG ATTTCCGCTC ACGCCTATCG GCTGCCGTCG CGCGCGCTCG CGAGTCAGGG TGACATCAAT ACGCTGCGGG CGTTTCTCGC AGGGTCGGGC GTGATTGCGT TTTTCGACGC GCCTTGGCTG GTGGTCTACG TAGTCGTCAT CGGCCTCTTT CATTGGTCTT TGGCGCTGAT TGCGGTTCTC AGCGCACTGC TGTTGGTGAG TGTCGCGCTG GTCAACGACC GACTCACGCG CAAGGGCATC GAGTCTTACC TTGCGCGGCA GCGGGAGGGG GATGCGTTCT ACCAGCACCT CATCCGCAAT GCCGAAGTCA TGACCGTGCT CGGCATGACG GAAAACCTGG TGGGTGCCTG GGATGTACGC AAGCGCGACT ACATCGCCGC GCAGCGTGAC GTGTCGGATC GCAGCGCGTT TTATCGCGAC TTGACCAAGG GGCTGCGGCA GGCGATCCAG GTGATCATGA TGGCGGCCGG TGCATGGCTG GTGATTTCGG GCCATGCGAC GCCGGGCGTG ATGCTGGCCA CGACCATCCT GCTCGGCAAG GCGTTGGCGC CGATCGAACA GTTGATTGGC AACTGGAGGC AGGCCGGCGA GTTGCGCGAA GCATGGCCTC GTCTGGAGGC ACTGCTGGCC AGTCAGACCG AGGCCGAACC GATCGCGTTG CCACCGCCCA CCGGCGAAAT TCGGGTCGAG CAGATCGCGT TCAGCGTGCC GTCGCGAACG CCCGGCCTGG GACGGCTATT GCTGCGCGGT ATCAATTTCA CGCTGGCCGC GGGCCAGACG CTGGTGATCA CGGGGCCGAG CGCATCCGGC AAGTCGACGT TGCTGCGGGT CATCGCGGGG TTGTGGCGAC CGCAGGCAGG TGCGGTGCGG CTGGACGGCG CCGACATGGC GCAGTGGCCC CGATCTTCCC TGGGCCGGTA TCTCGGGTAC GTGCCGCAGG ACGTCGAGCT GTTCGCAGGC ACCGTCGCTG AAAACATCGC CCGGACCGCG AAGCCGCTCC CGCTCGATTC GGCCGCGATC GTGCGCGCGG CGAAGCGAGC GGAGGTTCAC GAGATGATCT TGAATCTTCC CGATGGATAC GAGACGCTGA TCGGTGACGC GGGAGAGCTG TTGTCCGGGG GCCAGCGTCA GCGCATCGCC CTCGCGCGTG CCTTGTACGG CGAGCCAGCC GTGCTGCTGC TGGACGAGCC CAATGCGAGC CTCGACACGA TGGGGGAAGC CGCGCTCGAA CGCGTGCTGC GCCATCTGAA AGCCGATGGA ATGACCGTCA TCGCGGTCAC CCACCGGCCG TCTCTGCTCG CACTGGCTGA CCGGATATTG CGGCTGAAAG ATGGCCAAAT GGAACGGCTT GACATGCCAC CTGGACCGGA GCAAGTCGAT AGCGATTCGT GCACAGCGAA TGGGCAAACC GACGACACCA GTGGCTTACC GCAGGGAATC GATTTCTCCG CGTTGCAGGC AAGCCGGTCT TCGTTGCAGG CCGCCCGGGT GCCAACGCTT GGTCCGGCGA TGGAAGGCAA CCGATGA
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Protein sequence | MYQLIRRHLV IAAAFGIASN LLLLTPTIYL LQVYDRVLPS QSIQTLLMLM AFMAITLGMN ICVDIARSRI LSDLGVRIGN RLERLALQAQ ISAHAYRLPS RALASQGDIN TLRAFLAGSG VIAFFDAPWL VVYVVVIGLF HWSLALIAVL SALLLVSVAL VNDRLTRKGI ESYLARQREG DAFYQHLIRN AEVMTVLGMT ENLVGAWDVR KRDYIAAQRD VSDRSAFYRD LTKGLRQAIQ VIMMAAGAWL VISGHATPGV MLATTILLGK ALAPIEQLIG NWRQAGELRE AWPRLEALLA SQTEAEPIAL PPPTGEIRVE QIAFSVPSRT PGLGRLLLRG INFTLAAGQT LVITGPSASG KSTLLRVIAG LWRPQAGAVR LDGADMAQWP RSSLGRYLGY VPQDVELFAG TVAENIARTA KPLPLDSAAI VRAAKRAEVH EMILNLPDGY ETLIGDAGEL LSGGQRQRIA LARALYGEPA VLLLDEPNAS LDTMGEAALE RVLRHLKADG MTVIAVTHRP SLLALADRIL RLKDGQMERL DMPPGPEQVD SDSCTANGQT DDTSGLPQGI DFSALQASRS SLQAARVPTL GPAMEGNR
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