Gene Bamb_3586 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_3586 
Symbol 
ID4312482 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008391 
Strand
Start bp409707 
End bp411503 
Gene Length1797 bp 
Protein Length598 aa 
Translation table11 
GC content64% 
IMG OID638151428 
Producttype I secretion system ATPase 
Protein accessionYP_775474 
Protein GI115358336 
COG category[R] General function prediction only 
COG ID[COG4618] ABC-type protease/lipase transport system, ATPase and permease components 
TIGRFAM ID[TIGR01842] type I secretion system ABC transporter, PrtD family 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.581333 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTATCAAC TCATCAGGCG CCATCTGGTG ATCGCTGCCG CGTTCGGTAT CGCATCAAAT 
TTGCTGCTGC TGACGCCGAC CATCTACCTG CTGCAGGTCT ACGACCGCGT GCTACCGAGC
CAGAGTATTC AAACGCTGCT GATGTTGATG GCCTTCATGG CGATCACACT TGGGATGAAT
ATCTGCGTCG ATATTGCCCG CAGCCGGATC TTGTCGGACC TGGGCGTGCG AATCGGCAAC
CGGCTCGAGC GACTCGCGTT GCAGGCGCAG ATTTCCGCTC ACGCCTATCG GCTGCCGTCG
CGCGCGCTCG CGAGTCAGGG TGACATCAAT ACGCTGCGGG CGTTTCTCGC AGGGTCGGGC
GTGATTGCGT TTTTCGACGC GCCTTGGCTG GTGGTCTACG TAGTCGTCAT CGGCCTCTTT
CATTGGTCTT TGGCGCTGAT TGCGGTTCTC AGCGCACTGC TGTTGGTGAG TGTCGCGCTG
GTCAACGACC GACTCACGCG CAAGGGCATC GAGTCTTACC TTGCGCGGCA GCGGGAGGGG
GATGCGTTCT ACCAGCACCT CATCCGCAAT GCCGAAGTCA TGACCGTGCT CGGCATGACG
GAAAACCTGG TGGGTGCCTG GGATGTACGC AAGCGCGACT ACATCGCCGC GCAGCGTGAC
GTGTCGGATC GCAGCGCGTT TTATCGCGAC TTGACCAAGG GGCTGCGGCA GGCGATCCAG
GTGATCATGA TGGCGGCCGG TGCATGGCTG GTGATTTCGG GCCATGCGAC GCCGGGCGTG
ATGCTGGCCA CGACCATCCT GCTCGGCAAG GCGTTGGCGC CGATCGAACA GTTGATTGGC
AACTGGAGGC AGGCCGGCGA GTTGCGCGAA GCATGGCCTC GTCTGGAGGC ACTGCTGGCC
AGTCAGACCG AGGCCGAACC GATCGCGTTG CCACCGCCCA CCGGCGAAAT TCGGGTCGAG
CAGATCGCGT TCAGCGTGCC GTCGCGAACG CCCGGCCTGG GACGGCTATT GCTGCGCGGT
ATCAATTTCA CGCTGGCCGC GGGCCAGACG CTGGTGATCA CGGGGCCGAG CGCATCCGGC
AAGTCGACGT TGCTGCGGGT CATCGCGGGG TTGTGGCGAC CGCAGGCAGG TGCGGTGCGG
CTGGACGGCG CCGACATGGC GCAGTGGCCC CGATCTTCCC TGGGCCGGTA TCTCGGGTAC
GTGCCGCAGG ACGTCGAGCT GTTCGCAGGC ACCGTCGCTG AAAACATCGC CCGGACCGCG
AAGCCGCTCC CGCTCGATTC GGCCGCGATC GTGCGCGCGG CGAAGCGAGC GGAGGTTCAC
GAGATGATCT TGAATCTTCC CGATGGATAC GAGACGCTGA TCGGTGACGC GGGAGAGCTG
TTGTCCGGGG GCCAGCGTCA GCGCATCGCC CTCGCGCGTG CCTTGTACGG CGAGCCAGCC
GTGCTGCTGC TGGACGAGCC CAATGCGAGC CTCGACACGA TGGGGGAAGC CGCGCTCGAA
CGCGTGCTGC GCCATCTGAA AGCCGATGGA ATGACCGTCA TCGCGGTCAC CCACCGGCCG
TCTCTGCTCG CACTGGCTGA CCGGATATTG CGGCTGAAAG ATGGCCAAAT GGAACGGCTT
GACATGCCAC CTGGACCGGA GCAAGTCGAT AGCGATTCGT GCACAGCGAA TGGGCAAACC
GACGACACCA GTGGCTTACC GCAGGGAATC GATTTCTCCG CGTTGCAGGC AAGCCGGTCT
TCGTTGCAGG CCGCCCGGGT GCCAACGCTT GGTCCGGCGA TGGAAGGCAA CCGATGA
 
Protein sequence
MYQLIRRHLV IAAAFGIASN LLLLTPTIYL LQVYDRVLPS QSIQTLLMLM AFMAITLGMN 
ICVDIARSRI LSDLGVRIGN RLERLALQAQ ISAHAYRLPS RALASQGDIN TLRAFLAGSG
VIAFFDAPWL VVYVVVIGLF HWSLALIAVL SALLLVSVAL VNDRLTRKGI ESYLARQREG
DAFYQHLIRN AEVMTVLGMT ENLVGAWDVR KRDYIAAQRD VSDRSAFYRD LTKGLRQAIQ
VIMMAAGAWL VISGHATPGV MLATTILLGK ALAPIEQLIG NWRQAGELRE AWPRLEALLA
SQTEAEPIAL PPPTGEIRVE QIAFSVPSRT PGLGRLLLRG INFTLAAGQT LVITGPSASG
KSTLLRVIAG LWRPQAGAVR LDGADMAQWP RSSLGRYLGY VPQDVELFAG TVAENIARTA
KPLPLDSAAI VRAAKRAEVH EMILNLPDGY ETLIGDAGEL LSGGQRQRIA LARALYGEPA
VLLLDEPNAS LDTMGEAALE RVLRHLKADG MTVIAVTHRP SLLALADRIL RLKDGQMERL
DMPPGPEQVD SDSCTANGQT DDTSGLPQGI DFSALQASRS SLQAARVPTL GPAMEGNR