| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_3579 |
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| Symbol | |
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| ID | 4312475 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008391 |
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| Strand | - |
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| Start bp | 403379 |
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| End bp | 404086 |
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| Gene Length | 708 bp |
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| Protein Length | 235 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 638151421 |
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| Product | protocatechuate 3,4-dioxygenase, beta subunit |
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| Protein accession | YP_775467 |
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| Protein GI | 115358329 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3485] Protocatechuate 3,4-dioxygenase beta subunit |
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| TIGRFAM ID | [TIGR02422] protocatechuate 3,4-dioxygenase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.195352 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.218152 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGATTCCC CCACGATCCT CACGCCGCGC GACTGGCCGT CGCATCCCGC ATATGTCCAC
CCCGAGTACC GTTCGTCGGT GAAGCGCGGC CCGACGCGCC CGATGATCCC GCTGAAGGAA
AAGCTGCGCG ACCAGTACGC GCCCGTCTAC GGTGCGGAGG ATCTCGGCGC GCTCGACCAC
GACCTGACGA AGAACTCGGT GAAGAACGGC GAGCCGCTCG GCGAACGCAT CGTCGTCACC
GGGCGCGTGC TCGACGAAGG CGGCAAGCCC GTGCGCAACA CGCTCGTCGA GGTATGGCAG
GCGAACGCCG CCGGCCGCTA CGTGCACAAG GTCGACCAGC ACGACGCGCC GCTCGATCCG
AACTTCCTCG GCGCGGGCCG CTGCCTGACC GATAACGAAG GCCGCTACCG CTTCCTGACG
ATCAAGCCCG GCGCCTATCC GTGGGGCAAC CATCCGAACG CGTGGCGCCC GAATCACATC
CACTTCTCGC TGTTCGGCGA CTACTTCGGC TCGCGCCTCG TCACGCAGAT GTACTTCCCC
GGCGATCCGC TGCTCGCGTA CGACCCGATC TTCCAGGGCA CGCCGGAAGC CGCGCGCGAT
CGCCTGATCT CGCGCTTCTC GATGGACATC ACCGAAGAAG GCTATGCGCT CGGCTACGAA
TTCGACATCG TGCTGCGCGG CCGCGACGCT ACCCCGATGG AGCGCTGA
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| Protein sequence | MDSPTILTPR DWPSHPAYVH PEYRSSVKRG PTRPMIPLKE KLRDQYAPVY GAEDLGALDH
DLTKNSVKNG EPLGERIVVT GRVLDEGGKP VRNTLVEVWQ ANAAGRYVHK VDQHDAPLDP
NFLGAGRCLT DNEGRYRFLT IKPGAYPWGN HPNAWRPNHI HFSLFGDYFG SRLVTQMYFP
GDPLLAYDPI FQGTPEAARD RLISRFSMDI TEEGYALGYE FDIVLRGRDA TPMER
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