Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_3571 |
Symbol | |
ID | 4312467 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008391 |
Strand | + |
Start bp | 395939 |
End bp | 397501 |
Gene Length | 1563 bp |
Protein Length | 520 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 638151413 |
Product | extracellular solute-binding protein |
Protein accession | YP_775459 |
Protein GI | 115358321 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.57508 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.258108 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACAAGC CGCATTCGTT CCCGGTGTTC CGTCCACGCG CACTCTTCGC CGCGGGGGCA GGCGCGCTCG CGCTGTCGGT CGCGGCGCCC GCGTTCGCGC AACAGAACGT CGTGGTCGCC GTGTACTCGA CGTTCACGAC GATGGACCCG TACGACGCGA ACGACACGGT GTCGCAAGCC GTCGTCAAGT CGTTCTACGA AGGGCTGTTC GGCTTCGACA AGGACATGAA GCTCGTCAAC GTGCTCGCGA CGGGCTACCA GGCGTCGCCC GATGCGAAGG TCTATACGGT CAAGCTGCGC GACGGCGTGA AGTTCCAGGA CGGCACCGAC TTCAACGCCG CCGCGGTGAA GGCGAACTTC GACCGCGTGA CCGATCCGGC GAACAAGCTG AAGCGTTACG GGCTGTTCCG CGTGATCGAG AAGACCGAGG TGGTCGATCC GATGACGGTG AAGTTCACGC TGCACGAGCC GTTCTCCGCG TTCATCAACA CGCTCGCACA CCCGTCGGCG GTGATGATTT CGCCGGCCGC GCTGAAGAAG TGGGGGCGCG ACGTGTCGCT GCATCCGGTC GGAACCGGCC CGTTCGAGTT CGTCGAATGG AAGCAGACCG ACGACATGAA GGTGAAGAAA TTTGCCGGCT ACTGGAAGAA GGGCTATCCG AAGGTCGATT CGATCGACTG GAAGCCGGTG GTCGACAACA ACACGCGCGC CGCGCTGCTC AAGACCGGCG AGGCGGATTT CGCGTTCACG ATTCCGTTCG AGCAGGCCGC CGACCTGAAG AGCAACCCGA AGGTCGAGCT GATCGAGCGG CCGTCGATCA TCCAGCGCTA CATCTCGCTG AACACGCAGA AGAAGCCGTT CGACAATCCG AAGGTGCGTG AGGCGCTGAA TTACGCGGTC AACAAGGAAG CGCTCGCGAA GGTCGTGTTC GCCGGCTATG CGACGCCGCA GACGGGCGTC GCACCGATCG GCGTCGAATA CGCGACCAAG CTCGGGCCGT GGCCGTACGA TCCGGCGAAG GCGCGCGCGC TGCTGAAGGA GGCCGGCTAT CCGAACGGCT TCGAATCGAC GCTCTGGTCC GCGTACAACC ATTCGACGGC GCAGAAGCTG ATCCAGTTCG TCCAGCAGCA GCTCGCGCAG GTCGGTGTGA AGGTGCAGGT GCAGGCGCTG GAAGCCGGCG AGCGGGTCGC GAAGGTCGAG AGCGCGCAGG ATCCGGCCGC GGCGCCGGTG CGGATGTACT ACAGCGGCTG GTCGGCATCG ACGGGCGAAG CGAACTGGGC GCTGTCGCCG CTGCTCGCGT CCACGTCGGC GCCGCCGAAG CTCTACAACA CCGCGTACTA CAAGAACAGT GCGGTCGACG ACGCGCTCGC GAAGGCGCTC GAGACGACCG ACCGGGCGAA GAAGGCCACC CTGTACGCCG ACGCGCAGAA GCAGGTGTGG GCCGACGCGC CGTGGATTTT CCTGGTGCAG GAGAAGATCG TTTATGCGCG TAACAAGCGC CTGCACGGCA TGTACGTGAT GCCGGACGGT TCGTTCAACT TCGACGAAAT CTCGGTGAAA TGA
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Protein sequence | MNKPHSFPVF RPRALFAAGA GALALSVAAP AFAQQNVVVA VYSTFTTMDP YDANDTVSQA VVKSFYEGLF GFDKDMKLVN VLATGYQASP DAKVYTVKLR DGVKFQDGTD FNAAAVKANF DRVTDPANKL KRYGLFRVIE KTEVVDPMTV KFTLHEPFSA FINTLAHPSA VMISPAALKK WGRDVSLHPV GTGPFEFVEW KQTDDMKVKK FAGYWKKGYP KVDSIDWKPV VDNNTRAALL KTGEADFAFT IPFEQAADLK SNPKVELIER PSIIQRYISL NTQKKPFDNP KVREALNYAV NKEALAKVVF AGYATPQTGV APIGVEYATK LGPWPYDPAK ARALLKEAGY PNGFESTLWS AYNHSTAQKL IQFVQQQLAQ VGVKVQVQAL EAGERVAKVE SAQDPAAAPV RMYYSGWSAS TGEANWALSP LLASTSAPPK LYNTAYYKNS AVDDALAKAL ETTDRAKKAT LYADAQKQVW ADAPWIFLVQ EKIVYARNKR LHGMYVMPDG SFNFDEISVK
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