Gene Bamb_3570 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_3570 
Symbol 
ID4312466 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008391 
Strand
Start bp393907 
End bp395808 
Gene Length1902 bp 
Protein Length633 aa 
Translation table11 
GC content70% 
IMG OID638151412 
Productoligopeptide/dipeptide ABC transporter, ATPase subunit 
Protein accessionYP_775458 
Protein GI115358320 
COG category[R] General function prediction only 
COG ID[COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase 
TIGRFAM ID[TIGR02323] phosphonate C-P lyase system protein PhnK 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.15689 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTTCGA GCCGAACCCC GTCCGCGCTG GTGCTGCCGG ATCAGCGCGT CGTCGCCGTC 
GACGACCTGT CGGTCATGTT CCGTCGCGGC GCCGCGACGT TCGATGCGGT GCGCAACGTG
TCGTTTCACG TCGATCGCGG CGAGACGCTC GCGATCGTCG GCGAATCGGG CTCCGGCAAG
TCGGTCACGT CACTCGCGCT GATGCGGCTC GTCGAGCACG GCGGCGGCGA GATCACGAGC
GGTCGGATCG CGTTGCGGCG TCGCGGCGGT GCGCTCGTCG ACCTCGCTCA GGCGAGCGCG
GCGACGATGC GCGGGATCCG CGGCGCGGAC ATCGCGATGA TCTTCCAGGA ACCGATGACG
TCGCTGAACC CGGTGTTTAC GGTCGGCGAC CAGATCAGCG AGGCGATCGC GCTGCACCAG
TCGAAAAGCG CGACCGAAGC GCGCGCCGAA GCGTTGCGGC TGCTCGATCT CGTGCGCATC
CCGGAGGCGC GCCGCGTGTT CGCGCGGTAT CCGCACCAGT TGTCCGGCGG GATGCGGCAG
CGCGTGATGA TCGCGATGGC GCTATCGTGC CGGCCCGCGC TCCTGATCGC CGACGAGCCG
ACGACCGCGC TCGACGTGAC GATCCAGGCG CAGATCCTGC AGCTGATCCG CGGGCTGCAG
AACGAAATGA ACATGGGCGT GATCTTCATC ACGCACGACA TGGGCGTGGT CGCCGAAGTG
GCCGACCGCG TGCTCGTGAT GTATCGGGGC GAGAAGGTCG AGGAGGGCGA GTCCGAGCGC
ATTTTCGCGA CGCCCGCGCA TCGCTACACG CGTGCGCTGC TCGCGGCCGT GCCGCGGCTC
GGCTCGATGC AGGGCACCGA TATCCCCGAG AAATTTCCGC TGCTGAAGGT GGACGCGACG
GGCGCGGCCG CGCCGGCGCC TGCCGCGCAC GACTCCGCCG ACGCGCAGCC GCCGGTCGAT
GCGGCCGCGC CGCCGATTCT GCGCGTGCGC GATCTCGTCA CGCGGTTTCC GGTGAAGAGC
GGCGTGTTCA GCCGCGTGTC GCAGTACGTG CATGCGGTCG AGCGCGTGAG CTTCGAGCTG
CGCGCGGGCG AGACGCTCGC GCTCGTCGGC GAATCGGGCT GCGGCAAGTC GACCACCGGG
CGCTCGCTGC TGCGCCTCGT CGAATCGCAG AGCGGCTCGA TCGAATTCGA CGGCCGCGAC
ATCAGCGCGA TGAAGGGCGC GGACCTGCAG GCGCTGCGCC GCAACATCCA GTTCATCTTC
CAGGATCCGT TCGCGTCGCT GAACCCGCGC CTGACCGTCG GCTTCTCGAT CATGGAGCCG
CTGCTCGTGC ACGGCGTCGC GAGCGGCCGC GAAGCGCAGG CGCGCGTCGA CTGGCTGCTG
GACAAGGTCG GCCTGCCGCC GGAGGCCGCG CGCCGCTATC CGCACGAATT CTCGGGCGGC
CAGCGCCAGC GGATCGCCAT CGCACGCGCG CTCGCGCTGA ACCCGAAGGT CGTGATCGCC
GATGAATCGG TGTCCGCGCT CGACGTGTCG GTGCAGGCGC AGATCGTCAA CCTGATGCTC
GACCTGCAGC GCGAGCTCGG CGTCGCGTAT CTGTTCATCT CGCACGACAT GGCGGTGGTC
GAGCGCATCA GCCATCGCGT CGCGGTGATG TATCTCGGCC AGATCGTCGA GATCGGCCCG
CGCCGCGCGG TGTTCGAGGC GCCGCAGCAT CCTTATACGA GGAAGCTGAT GAGCGCGGTG
CCGGTGGCCG ACCCCGCGCG CCGGCATGCG CCGCGCCAGC TTGCGGCGGA CGAGATTCCG
AGCCCGATCC GCGCGATCGG CGACGAGCCG ACGGTCGCGC CGCTCGTCGC GGTCGGCCCC
GATCATTTCG TCGCGACGCA TCGCGTCGGC GGCGCGTATT GA
 
Protein sequence
MTSSRTPSAL VLPDQRVVAV DDLSVMFRRG AATFDAVRNV SFHVDRGETL AIVGESGSGK 
SVTSLALMRL VEHGGGEITS GRIALRRRGG ALVDLAQASA ATMRGIRGAD IAMIFQEPMT
SLNPVFTVGD QISEAIALHQ SKSATEARAE ALRLLDLVRI PEARRVFARY PHQLSGGMRQ
RVMIAMALSC RPALLIADEP TTALDVTIQA QILQLIRGLQ NEMNMGVIFI THDMGVVAEV
ADRVLVMYRG EKVEEGESER IFATPAHRYT RALLAAVPRL GSMQGTDIPE KFPLLKVDAT
GAAAPAPAAH DSADAQPPVD AAAPPILRVR DLVTRFPVKS GVFSRVSQYV HAVERVSFEL
RAGETLALVG ESGCGKSTTG RSLLRLVESQ SGSIEFDGRD ISAMKGADLQ ALRRNIQFIF
QDPFASLNPR LTVGFSIMEP LLVHGVASGR EAQARVDWLL DKVGLPPEAA RRYPHEFSGG
QRQRIAIARA LALNPKVVIA DESVSALDVS VQAQIVNLML DLQRELGVAY LFISHDMAVV
ERISHRVAVM YLGQIVEIGP RRAVFEAPQH PYTRKLMSAV PVADPARRHA PRQLAADEIP
SPIRAIGDEP TVAPLVAVGP DHFVATHRVG GAY