Gene Bamb_3566 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_3566 
Symbol 
ID4312462 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008391 
Strand
Start bp390207 
End bp391538 
Gene Length1332 bp 
Protein Length443 aa 
Translation table11 
GC content67% 
IMG OID638151408 
Productmajor facilitator transporter 
Protein accessionYP_775454 
Protein GI115358316 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2271] Sugar phosphate permease 
TIGRFAM ID[TIGR00893] d-galactonate transporter 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000684429 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.364964 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATAAGA CTGAGCAAGG CGCCCCAGCC GGGCGGATTT GCATGAATCA GGAGACAGCA 
GTGAAGACAG TCAAGGCGTT GCGCTGGTGG ATCATCGTGC TGGTATGTCT GGGCACGATC
CTCAACTATC TCGCACGAAA TTCCCTCGCG GTGCTCGCAC CGGAACTGAA GCACGTGTTC
GCGATCTCGA CGCAGCAGTA CTCATACATC GTCGGCGCGT TCCAGATCGG CTACACGATC
ATGCAGCCGG TGTGCGGATT CATCGTCGAC CTGATCGGGC TGCGGCTCGG GTTCGCGCTG
TTCGCGATGC TGTGGTCGGT GGTCGGCGTC GCGCACGGCT TCGCGTCGGG CTGGCTGTCG
CTCGGCATTC TGCGCGGCCT GCTCGGGCTG TTCGAGGCCG CGGCGATTCC GTCGGGTATG
AAGGCCGTCG CCGAATGGTT TCCCGATCGC GAGAAATCCG TCGCGGTCGG CTACTTCAAC
GCTGGCACGT CGCTCGGCGC CGCGATCGCG CCGCCGCTCG TCGTGTTCCT GTCGATGCGG
TTCGGCTGGC AATCCGCGTT CATGGTCACC GGCGCGCTTG GCTTCGCGTG GGCCGTGCTC
TGGTACACGC AGTACCGGTC GCCGGCCGAG CATCCGCGCA TCTCGTCGCA GGAGCGCACG
CTGATCAGTG ACGGCCAGGC CAGGATGCCG GCCGTGTCGA AGCGCCGGAT TCGCGACGTC
GTCACCGCGC GCCGCTTCTG GGCGATCGCG CTGCCGCGCT TCTTCGCGGA ACCGGCATGG
CAGACCTTCA GCTTCTGGAT TCCGCTGTAT CTCGCGACCG AACGCCACAT GGCGCTCACG
GAGATCGCCA TCTTCGCGTG GATGCCGTTC CTCGCGGCGG ACCTCGGCGG CATCGCCGGC
GGCTACCTGT CGCCCTACCT CGCGAAACGG TTCAGTCTGC CGCTCGTGTG GTCGCGGGTC
GCGGGCGTCG CGCTCGGCGC GGTGCTGATG CTCGGGCCGG CGACGATCGG GCTCGTGTCG
TCGCCGTACA CGGCCATTGC GCTGTTCTGC GTCGGCGGCT TTGCGCACCA GATGATCTCC
GCGCTCGTCA ACACGCTGTC GGCCGATGTG TTCGACTCCG AGGAAGTCGG CACCGCGAGC
GGCTTCGCGG GAATGGCCGC GTGGATCGGC GGGCTCGGCT TCTCGCTGCT CGTCGGCGCG
CTCGCCGACA AGATCGGCTA CGCGCCGCTG TTCGCGTGCC TCGGCCTGTT CGACATCATC
GGCGTCACGC TGCTCGCGGT GCTGATCCGC GGGCAGTCGA AGCAGGAACG CCTGCTCGCG
CAGCATGCCT GA
 
Protein sequence
MNKTEQGAPA GRICMNQETA VKTVKALRWW IIVLVCLGTI LNYLARNSLA VLAPELKHVF 
AISTQQYSYI VGAFQIGYTI MQPVCGFIVD LIGLRLGFAL FAMLWSVVGV AHGFASGWLS
LGILRGLLGL FEAAAIPSGM KAVAEWFPDR EKSVAVGYFN AGTSLGAAIA PPLVVFLSMR
FGWQSAFMVT GALGFAWAVL WYTQYRSPAE HPRISSQERT LISDGQARMP AVSKRRIRDV
VTARRFWAIA LPRFFAEPAW QTFSFWIPLY LATERHMALT EIAIFAWMPF LAADLGGIAG
GYLSPYLAKR FSLPLVWSRV AGVALGAVLM LGPATIGLVS SPYTAIALFC VGGFAHQMIS
ALVNTLSADV FDSEEVGTAS GFAGMAAWIG GLGFSLLVGA LADKIGYAPL FACLGLFDII
GVTLLAVLIR GQSKQERLLA QHA