| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_3546 |
|---|
| Symbol | |
|---|
| ID | 4312442 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | - |
|---|
| Start bp | 366536 |
|---|
| End bp | 368395 |
|---|
| Gene Length | 1860 bp |
|---|
| Protein Length | 619 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 638151388 |
|---|
| Product | dihydroxy-acid dehydratase |
|---|
| Protein accession | YP_775434 |
|---|
| Protein GI | 115358296 |
|---|
| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase |
|---|
| TIGRFAM ID | [TIGR00110] dihydroxy-acid dehydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.108366 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCACAT ACCGTTCCAA AACCTCCACC GCCGGCCGCA ACATGGCAGG CGCGCGCTCG
CTGTGGCGCG CCACCGGCAT GAAAGACGAC GATTTCTCGA AGCCGATCAT CGCGGTCGTC
AACTCGTTCA CGCAGTTCGT GCCCGGGCAC GTGCACCTGA AGGATCTCGG CCAGTTGGTC
GCGCGCGAGA TCGAGGCCGC CGGCGGCGTC GCGAAGGAAT TCAACACGAT CGCGGTCGAC
GACGGCATCG CGATGGGCCA CGACGGCATG CTCTATTCGC TGCCGAGCCG CGACATCATC
GCCGACTCCG TCGAATACAT GGTGAACGCG CACTGCGCGG ACGCGATGGT GTGCATCTCG
AACTGCGACA AGATCACGCC GGGGATGCTG ATGGCCGCGA TGCGCCTCAA CATTCCGGTG
ATCTTCGTGT CGGGCGGCCC GATGGAAGCC GGCAAGACGC GTCTCGCGAA CCCGGTCACC
AAGACCGTCG AACTGAAGAA GCTCGACCTC GTCGACGCGA TGGTGATCGC GGCCGACCCG
GCGTATTCGG ATGCCGACGT CGCCGAAGTC GAACGCTCGG CCTGCCCGAC CTGCGGCTCG
TGCTCGGGCA TGTTCACCGC GAACTCGATG AACTGCCTGA CCGAAGCGCT CGGCCTGTCG
CTGCCCGGCA ACGGCACGGT CGTCGCGACG CACGCCGATC GCGAGCAGCT GTTCAAGCGC
GCCGGCCGCC GCATCGTCGA GCTGACCCGC CAGCACTACG AGCAGGACGA CATGCGCGCG
CTGCCGCGCT CGGTCGGCTT CAAGGCGTTC GAGAACGCGA TGACGCTCGA CATCGCGATG
GGCGGTTCGA CCAACACGAT CCTGCACCTG CTGGCGATCG CGCAGGAAGC CGGCATCGAC
TTCACGATGA AGGACATCGA TCGCCTGTCG CGCAGCGTGC CGCAGCTGTG CAAGGTCGCG
CCGAACACGA ACAAGTACCA CATCGAGGAC GTGCACCGCG CGGGCGGCAT CATGGCGATC
CTCGGCGAGC TCGACCGCGC CGGCAAGCTG CACACCGACG TGCCGACCGT GCACGCGCCG
ACGCTGAAGG ATGCGCTCGA CCAGTGGGAT ATCGTCCGCA CCGACGACCC GGCAGTGCGC
ACCTTCTACC AGGCCGGCCC GGCCGGGATC CCGACGCAAG TCGCGTTCAG CCAGGACACG
CGCTGGCCGA GCCTCGACCT CGACCGCGCC GAAGGCTGCA TCCGCTCGTA CGAGCATGCG
TTCTCGAAGG AAGGCGGCCT GGCCGTGCTG ACCGGCAACA TCGCGCTCGA CGGCTGCGTG
GTGAAGACGG CCGGCGTCGA CGAAAGCATC CTCGTGTTCG AGGGCTCGGC CCACGTCACC
GAATCGCAGG ACGAAGCGGT CGAGAACATC CTGAACGACA AGGTCAAGGC CGGCGACGTG
GTGATCGTGC GCTACGAAGG CCCGAAGGGG GGCCCCGGCA TGCAGGAAAT GCTGTACCCG
ACGAGCTACA TCAAGTCGAA GGGCCTCGGC AAGGCATGCG CGCTGCTGAC GGACGGCCGC
TTCTCGGGCG GCACGTCGGG CCTGTCGATC GGTCACTGCT CGCCGGAAGC GGCAGCGGGC
GGCGCGATCG GCCTCGTGCG CGACGGCGAC AAGATCCGCA TCGACATCCC GAACCGCACG
ATCGACGTGC TGGTGTCGGA CGAGGAACTC GCACGTCGCC GCGAAGAGCA GAACGCGAAG
GGCTGGAAGC CGGCGCAACC GCGTCCGCGC AAGGTGTCCG CGGCGCTGAA GGCCTATGCG
AAGCTGGTGA TGTCGGCCGA CAAGGGTGCC GTGCGCGACC TGTCGCTGCT GGACGACTGA
|
|---|
| Protein sequence | MPTYRSKTST AGRNMAGARS LWRATGMKDD DFSKPIIAVV NSFTQFVPGH VHLKDLGQLV
AREIEAAGGV AKEFNTIAVD DGIAMGHDGM LYSLPSRDII ADSVEYMVNA HCADAMVCIS
NCDKITPGML MAAMRLNIPV IFVSGGPMEA GKTRLANPVT KTVELKKLDL VDAMVIAADP
AYSDADVAEV ERSACPTCGS CSGMFTANSM NCLTEALGLS LPGNGTVVAT HADREQLFKR
AGRRIVELTR QHYEQDDMRA LPRSVGFKAF ENAMTLDIAM GGSTNTILHL LAIAQEAGID
FTMKDIDRLS RSVPQLCKVA PNTNKYHIED VHRAGGIMAI LGELDRAGKL HTDVPTVHAP
TLKDALDQWD IVRTDDPAVR TFYQAGPAGI PTQVAFSQDT RWPSLDLDRA EGCIRSYEHA
FSKEGGLAVL TGNIALDGCV VKTAGVDESI LVFEGSAHVT ESQDEAVENI LNDKVKAGDV
VIVRYEGPKG GPGMQEMLYP TSYIKSKGLG KACALLTDGR FSGGTSGLSI GHCSPEAAAG
GAIGLVRDGD KIRIDIPNRT IDVLVSDEEL ARRREEQNAK GWKPAQPRPR KVSAALKAYA
KLVMSADKGA VRDLSLLDD
|
|---|
| |