| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_3469 |
|---|
| Symbol | |
|---|
| ID | 4312365 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | - |
|---|
| Start bp | 266730 |
|---|
| End bp | 268619 |
|---|
| Gene Length | 1890 bp |
|---|
| Protein Length | 629 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 638151311 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_775357 |
|---|
| Protein GI | 115358219 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.136581 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.824361 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCCGC GACTACTCGA CTATTACAAC CAGGAACTCA TCTACATGCG CGAGCTCGCC
ACCGAGTTCG CACAGGCGCA CCCGAAAATC GCGCGCCGGC TCGGCATGCA GGCCGGTGAA
GTGGCGGACC CCTACGTCGA ACGCCTGATC GAGTCGTTCT GCTTCATGGC CGCGCGCCTG
CAGCTCAAGC TCGATGCCGA GTTTCCACGC TTCACGGGGC GGCTGCTGGA AGTGATCTAC
CCGAATTACG TCGCGCCCAC GCCGTCGATC GCGGTCGCGC GCCTGTATCC CGGTCAGGCC
GAAGGCAATC TGGCCGCCGG CTATCGTATC GCGCGCGGCA CGTCGTTCAA GGCGCGGGTT
CCGGATGGCG AAAAAACCGC TTGCCAGTTT ACGAGCGGAC AGGACGTCAC GCTCTGGCCG
CTCACGATCA CCGATGCACG GCTGACGGGT ATTCCGCCTG ACATTCCGGC GCTCGACCGC
CATGTTCCGC CCGACCGACA GGTGCGCGGT GCATTGCGGC TGCGGCTGGC GACGACCGGC
GACGTGCGCA TCGCCGATCT GAAGGGGCTC GACCGGTTGC CCGTGTATCT GGCCGGTGAC
GAACAGGTCG CCTCGCACCT GTTTGAGCTG CTGCACGTCG CCGGCGTCGC ATCCGTGATT
GCCGCGCCCG GAGAATTCGG CGTACCGGGC CGCTCTCCCG CCGCCGTGAT TCACGGTGCG
GTCGAACACG AGGGCTTGGG CACCGATCAG AACTTGCTGC CACTCACCTG GACGAAGTTC
CACGGACACA ACCTGCTGCA CGAATACTTC GCGTGCCCGG CAAGGTTCTG GTTCTTCGCA
CTCAACGGCC TTGCCGAAGG CCTGTCCCGC GTGAACGGTC GCGAGGTCGA AATCGTCGTG
CTGCTCGACC GGGCGCCCGG CCAGCTCGCG AACCTTGTCG ACGCGTCGCG CTTCGCGCTG
TTCTGCACGC CCGTCATCAA CCTCTTCAAA CGGCACACGG ATCGCATCGA GATTTCTCCC
CGCGAGACCG AATTTCATCT GGTACCCGCG CGACTCGCAC CGCTGGACTA TGAAGTGTTT
TCGGTAGAGA CGGTGTACGG GCAGGTCGCA GCGACCTCGG ACGAACTGGA ATTCCGTCCG
CTGTATCAAA CGCTGAACAA CGACGAAGGT AACCACGGGC GGTACTTCTC GACACGGCGC
GAACGGCGGC TCGCGTCCGA TTCGGCTCGC CGTTACGGCA CGCGAACTCC TTATGTCGGC
ACCGAAGTGT TTCTCTCGCT GGTTGACCAG AACGAGGCTC CCTACGGTGA AGACATCCGT
TTCCTGTCAG TCGATGCGCT GCTGACGAAC CGGGATCTCG CCACGCTCGT GCCGCGCGAC
GGCGTGCGTG ACTTGGCAAT GGAGGAGTCC GCACCCGTCG AAAGCATCGG TCTCATTCGC
CCGCCGAGTC CGCCCAAAGC CCCGTATGCG GAGCGAGAGA TGGCATGGCG CCTGATCCGC
CAGCTCAACT TCAACTACCT GCCGCTCGAA GGTCTCGATC ACCGTGACGG CGGTCAGGGA
CTACGCGACC TGCTGCGCCT ATACCTTTCG AACGACAACA ACGAACATTC GCGGCAAGTC
GAAAGCCTCG TCGGCGTCAA CACTCGCCCG GTAACACGCA AGCTGCCGGG CACGGGTCCG
ATGACGTTCG GGCGTGGCAT CGAGTGTGCA GTGACAGTCG ACGAGGCAGG CTTCTCCGGC
GTCAGCCCCT ATCTATTCGG TACGATTCTC GAGCACTGGC TGGCACGGCA CGTGTCGATC
AACAGCTTCA CGCAGACCGA ATTGCATTCG ATGCAGCGCG GCCGTATCGC ACGCTGGCCC
GTGCGCACCG GGACACGCGG AGTGCTGTGA
|
|---|
| Protein sequence | MDPRLLDYYN QELIYMRELA TEFAQAHPKI ARRLGMQAGE VADPYVERLI ESFCFMAARL
QLKLDAEFPR FTGRLLEVIY PNYVAPTPSI AVARLYPGQA EGNLAAGYRI ARGTSFKARV
PDGEKTACQF TSGQDVTLWP LTITDARLTG IPPDIPALDR HVPPDRQVRG ALRLRLATTG
DVRIADLKGL DRLPVYLAGD EQVASHLFEL LHVAGVASVI AAPGEFGVPG RSPAAVIHGA
VEHEGLGTDQ NLLPLTWTKF HGHNLLHEYF ACPARFWFFA LNGLAEGLSR VNGREVEIVV
LLDRAPGQLA NLVDASRFAL FCTPVINLFK RHTDRIEISP RETEFHLVPA RLAPLDYEVF
SVETVYGQVA ATSDELEFRP LYQTLNNDEG NHGRYFSTRR ERRLASDSAR RYGTRTPYVG
TEVFLSLVDQ NEAPYGEDIR FLSVDALLTN RDLATLVPRD GVRDLAMEES APVESIGLIR
PPSPPKAPYA EREMAWRLIR QLNFNYLPLE GLDHRDGGQG LRDLLRLYLS NDNNEHSRQV
ESLVGVNTRP VTRKLPGTGP MTFGRGIECA VTVDEAGFSG VSPYLFGTIL EHWLARHVSI
NSFTQTELHS MQRGRIARWP VRTGTRGVL
|
|---|
| |