Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_3292 |
Symbol | |
ID | 4312151 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008391 |
Strand | + |
Start bp | 78621 |
End bp | 80750 |
Gene Length | 2130 bp |
Protein Length | 709 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 638151134 |
Product | TonB-dependent copper receptor |
Protein accession | YP_775181 |
Protein GI | 115358043 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | [TIGR01778] TonB-dependent copper receptor |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.49865 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACCATTC CTTCCTTGCG CGCGCCGAGG GCGTCGCGCC ATTGCCGCGC GCGATGCGTG CCGCGCATGC TGAAACTCAC CATTCCCGCG CTGGCCGTCG GCGCGATGAG CGCGGCGGCC GCCGCTGAAG CCGCGCGCGC GGCCGGTGCG CCGACGGACG ACGCGGCCGT ACTGCTGCCC CCCGTCGAAG TCGTCGCGTC GCCGCTGACG ACACCGCTCG TCATCGTCAC GGATCCGAAG ACGCCGCGCC AGCCGCTGCC GGCCAGCGAC GGCGCCGACT ACCTGAAGAC GATTCCCGGT TTCACGTCGA TCCGCAGCGG CGGGACGAAC GGCGACCCCG TGCTGCGCGG GATGTTCGGT TCGCGGCTGA ACATTCTGGC GAACGGGATG CCGACGCTCG GTGCGTGTCC GAACCGGATG GACGCGCCGA CTTCGTATAT CGCGCCGGAA AGCTATGACA AGGTCACGGT CGTGAAGGGG CCGCAGACCG TGCTGTACGG CCCCGGCGCA TCGGCCGGCA CCGTGCTGTT CGAACGCGTG ACGCCGCGTT TCGAGCGCCC CGGCATGCGC TTCGACGGCA GCGTGGTCGG CGGCTCGTTC GGCCGCAACG ACCAGAACGT CGACGTGACG GCCGGCACGC CGGACGTCTA TGGCCGCGTG AGCGCGAACC ACGCGCACGC GCAGGATTAC CAGGACGGCA ACGGCAACAC CGTGCCGTCG CAATGGGACA AATGGAACGC GGATGCGGCG CTCGGCTGGA CGCCCGACGA TCACACGCGC GTCGAACTGA CGGCCGGCAC CGGTGACGGT TATGCGCGCT ATGCGGGGCG CGGGATGGAC GGCGCGCATT TCCGCCGCGA GACGTTCGGC CTGTCGTTCG ACAAGCGGCA TCTCGGCGAC GTGCTCGAGC GCATCGAGGC GCGCGTGTAC TACAACGAAG CCGACCATGT GATGGACAAC ACCACGCTGC GGCAGCCCGA TCCGACCAGC AGCATGCCGA TGCGGATGGC ATCCGAAGTG CGGCGCCGCA CGCTCGGCGC GCGGGCGGCG GCGACGTTTC GTTTCGGCGA CGACTTCAAG CTTGTCACCG GCGTCGACGC GCAGTCGAAC CGGCTCGACG CGCGCTCGGC GATGGGGCGG CAGAACTACG GCGACCAGCC GTGGGATGCG CAGGCGACGA TGTGGAATGC GGGCGCGTTC GGCGAGCTGA CGTGGTACGC GAGCGATGCG GCGCGCGTGA TCGGCGGCGC GCGGGTCGAC TACGCGAGCG CCCGCGACAA GCGTGCGACG ACGAGCGGGA TGATGGCGAG CAAGCCGAAT CCCACCTTCG ACGACGATCG CGCGCGCGTG CTGCCGAGCG GCTTCGTGCG CTACGAGCGC GATCTCGCGT CGCTGCCGGT CACGTGGTAC GCGGGAGTCG GTCATGCGGA ACGCTATCCG GACTACTGGG AGCTGTTCTC CGCGAAGCGC GGGCCGGCCG GTTCGGTCAA CGCGTTCTCG GCGGTGCAGC CGGAGAAGAC CACGCAGCTC GACATCGGCG CGCAGTACAA GAGCGAGCGG GTCGATGCGT GGGTGTCGGC CTACGCAGGC TATGTGCAGG ACTACATCCT GTTCAATTAC GCGGCCGGGA TGATGGGCCC GACCACGCAG GCGACCAACG TCAACGCGCA GATCTTCGGT GGCGAAGCCG GCGTGTCGTG GCGGCCGGTC GCACCGCTGC GCGTCGAGAC GTCGCTTGCT TATGCATGGG GGCGCAACGC GACGAGCGGC GATCCGTTGC CGCAGATGCC GCCGCTCGAG GCGCGCGTTG GGCTCGAATA CACGCGCGGC GCATGGTCGG CCGGTGGCTT GTGGCGGATC GTTGCGCCGC AGCATCGCTA TGCGCTGAAC GAGGGCAACG TGGTCGGCAA GGACTTCGGT CCGAGCGCCG GATTCGGCGT GTTGTCGCTG CATGCGCAGT ACAACGTCAG CAAGAAGGTG CAGATTTCGG TCGGCGTCGA CAACGTGCTG GACAAGGCGT ATGCGGAACA CCTGAACCTC GCCGGCAATG CGGGCTTCGG CTATCCGGCG AATGCGCCGG TGATGGAGCC GGGGCGTACG GCATGGGTGC GCGTGAGCGC GAAGCTCTGA
|
Protein sequence | MTIPSLRAPR ASRHCRARCV PRMLKLTIPA LAVGAMSAAA AAEAARAAGA PTDDAAVLLP PVEVVASPLT TPLVIVTDPK TPRQPLPASD GADYLKTIPG FTSIRSGGTN GDPVLRGMFG SRLNILANGM PTLGACPNRM DAPTSYIAPE SYDKVTVVKG PQTVLYGPGA SAGTVLFERV TPRFERPGMR FDGSVVGGSF GRNDQNVDVT AGTPDVYGRV SANHAHAQDY QDGNGNTVPS QWDKWNADAA LGWTPDDHTR VELTAGTGDG YARYAGRGMD GAHFRRETFG LSFDKRHLGD VLERIEARVY YNEADHVMDN TTLRQPDPTS SMPMRMASEV RRRTLGARAA ATFRFGDDFK LVTGVDAQSN RLDARSAMGR QNYGDQPWDA QATMWNAGAF GELTWYASDA ARVIGGARVD YASARDKRAT TSGMMASKPN PTFDDDRARV LPSGFVRYER DLASLPVTWY AGVGHAERYP DYWELFSAKR GPAGSVNAFS AVQPEKTTQL DIGAQYKSER VDAWVSAYAG YVQDYILFNY AAGMMGPTTQ ATNVNAQIFG GEAGVSWRPV APLRVETSLA YAWGRNATSG DPLPQMPPLE ARVGLEYTRG AWSAGGLWRI VAPQHRYALN EGNVVGKDFG PSAGFGVLSL HAQYNVSKKV QISVGVDNVL DKAYAEHLNL AGNAGFGYPA NAPVMEPGRT AWVRVSAKL
|
| |