Gene Bamb_3260 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_3260 
Symbol 
ID4312119 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008391 
Strand
Start bp43648 
End bp44415 
Gene Length768 bp 
Protein Length255 aa 
Translation table11 
GC content62% 
IMG OID638151102 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_775149 
Protein GI115358011 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism
[I] Lipid transport and metabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.00276657 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.102342 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCATCA CCTACGACTT CAGCGGCCAG GTGGCACTCG TGACCGGCGC AGCTTCCGGC 
ATGGGCCTGG CGGCCGCACG CGCATTCGCC AACGCTGGCG CGTCAGTCGC CCTCGCGGAC
ATCAGGGCCG ACGTTCTCGA TGCCGCGACG CAAGAACTTG CGGCAGCGGG CCATCGCGTG
ATCGGCGTGG CCGGCGACAT TTCCGACGAA GCCTACGTCA AGTCGCTCGT CGAGCAAACG
GTGAAGACGT TTGGGCGCCT GGATGCCGCG TTCAACAATG CCGGCATCCA AAGTCCGGCC
GTCGAAACCG CAGACGTCTC GAGCGAGGTG TTCGACCGCA TCAACGCGAT CAACCTGCGC
GGCGTGTGGC TGTGCATGAA ATACGAGCTG ATCCAGATGC GCTCGCAAGG CAATGGTGCG
ATCGTCAACA ACTCGTCTCT CGGCGGCTTG GTCGGTGTGC CGGGTCGAGC GGCATACCAC
GCGACAAAGC ACGGGCTGCT GGGACTGACC AAGAGTGCGG GTCTCGAATA TGCGTCTCAA
GGAATCCGAA TCAATGCTAT CTGCCCCGGT ATCGTGGAAA CGCCAATGGT CGCCGATATG
CTGAAGGGGG AAGCGGCGGT CATGAATGAA ATGATGAAGG ATGTACCGAT TGGCCGACTC
GGCACGGCGC AGGAGATCGC CGACGCCGTT CTGTGGCTAT GTAGTCCCGG CTCCAGCTTC
GTGGTTGGCG TCGCACTCCC GGTCGATGGC GGCTACACCG CACGCTGA
 
Protein sequence
MTITYDFSGQ VALVTGAASG MGLAAARAFA NAGASVALAD IRADVLDAAT QELAAAGHRV 
IGVAGDISDE AYVKSLVEQT VKTFGRLDAA FNNAGIQSPA VETADVSSEV FDRINAINLR
GVWLCMKYEL IQMRSQGNGA IVNNSSLGGL VGVPGRAAYH ATKHGLLGLT KSAGLEYASQ
GIRINAICPG IVETPMVADM LKGEAAVMNE MMKDVPIGRL GTAQEIADAV LWLCSPGSSF
VVGVALPVDG GYTAR