| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_3250 |
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| Symbol | |
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| ID | 4312216 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008391 |
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| Strand | + |
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| Start bp | 31232 |
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| End bp | 33172 |
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| Gene Length | 1941 bp |
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| Protein Length | 646 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 638151091 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_775139 |
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| Protein GI | 115358001 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0235548 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGGCGC GTTTGATTTC CTACAATGGA ACGACGATGT ACGACTTGCT GAAAACCATC
GACGACCCGG CGGATCTGCG CCGCCTCGAT CGTCGCCAAC TCCAACCGCT CGCGGATGAA
CTGCGCGCGT TCGTGCTCGA CAGCGTGTCG AAGACGGGCG GCCATTTGTC GTCCAACCTC
GGGACGGTCG AGCTGACGAT CGCGTTGCAC TACGTGTTCA ACACGCCGAA CGACCGGATC
GTCTGGGACG TGGGCCACCA GACCTACCCG CACAAGATCC TGACGGGTCG CCGCGACCAG
ATGCATTCGC TGCGCCAGTA CGACGGCATC TCGGGTTTCC CGCGCCGCAG CGAGTCCGAA
TACGACACGT TCGGCACCGC GCATTCGAGC ACGTCGATTT CGGCGGCGCT CGGGATGGCG
ATCGGCAGCC AGCTGAACGG CGACGACCGC TTCTCGATCG CGGTGATCGG CGACGGCGCG
ATGACGGCCG GCATGGCGTT CGAGGCGATG AACAACGCGG GCGTGTCGGA GGATGCGAAA
CTGCTCGTGA TCCTCAACGA CAACGACATG TCGATTTCGC CGCCGGTCGG CGCGCTGAAC
CGCCATCTCG CGCGCCTGAT GTCGGGCCGC TTCTACGCGG CGGCGCGTGC TGGCGTCGAG
CGCGTGCTGA GCGTGGCGCC GCCGGTGCTC GAACTCGCGC GCAAGCTCGA GGAGCACGCG
AAGGGCATGG TCGTGCCGGC GACGCTGTTC GAAGAGTTCG GCTTCAACTA CATCGGCCCG
ATCGACGGTC ACGATCTCGA TTCGCTGATC CCGACGCTGC AGAACATTCG CGAGCTGCGC
GGCCCGCAAT TCCTGCACGT GGTGACGAAG AAAGGCCAGG GCTACAAGCT CGCCGAAGCG
GATCCCGTGC TCTATCACGG CCCCGGCAAG TTCAACCCGG CCGAAGGCAT CAAGCCGTCG
CCCACGCCCG CGAAGAAGAC GTACACGCAG GTGTTCGGGG AATGGCTGTG CGATGAAGCC
GAGCGCGATT CGCGCGTCGT CGGCATCACG CCCGCGATGC GCGAAGGCTC GGGCATGGTC
GAGTTCGAGA AGCGCTTCAA GGATCGCTAC TACGACGTCG GCATCGCCGA GCAGCACGCG
GTGACGTTCG CGGGCGGCCT CGCGACCGAA GGGCTGAAGC CCGTCGTCGC GATCTACTCG
ACGTTCCTGC AGCGTGCGTA CGACCAGCTG ATCCACGACG TCGCGCTGCA GAACCTGCCG
GTCGTGTTCG CGATCGACCG CGCGGGCCTC GTCGGCGCCG ACGGTGCGAC GCACGCGGGC
GCGTACGATC TCGCGTTCAT GCGCTGCATC CCGAACATGA CGATCATGGC CGCGTCCGAC
GAGAACGAAT GCCGCCAGAT GCTGCACACG GCGCTTCAGC AGCCGAACCC GACCGCGGTG
CGTTATCCGC GCGGCGCGGG CACGGGCGTG GCGACGGTGA AGGAATTCAC CGAGATCCCG
CTCGGCAAGG GCGAAGTGCG TCGCCGTACG TCGCAGCCGG AAGGCAAGCG CGTCGCGATT
CTCGCGTTCG GCACGATGGT CGCGCCGTCG CTCGCGGCGG GCGAGGAGCT CGACGCCACG
GTCGCGAACA TGCGCTTCGT GAAGCCGATC GATGCGGCGC TCGTGCGTGA ACTCGCCGAG
ACCCACGACT ACCTCGTCAC GGTCGAGGAA GGCTGCGTGA TGGGCGGTGC GGGCTCGGCC
TGCGTCGAAG CCCTGATGGA GAGTGGGGTT ATCCGACCCG TAATACAATT GGGCCTCCCT
GACCAGTTCA TCGATCACGG CGACCCCGCT AAGCTGCTGG CGCAATGCGG CCTCGACGGC
GCGGGCATCG CGAAATCGAT TCGCGAACGC TTCCTGAGCC CGGCGGCCGA CGTCGCCGAT
CAGGCGAAGC GCGTCGCGTA A
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| Protein sequence | MRARLISYNG TTMYDLLKTI DDPADLRRLD RRQLQPLADE LRAFVLDSVS KTGGHLSSNL
GTVELTIALH YVFNTPNDRI VWDVGHQTYP HKILTGRRDQ MHSLRQYDGI SGFPRRSESE
YDTFGTAHSS TSISAALGMA IGSQLNGDDR FSIAVIGDGA MTAGMAFEAM NNAGVSEDAK
LLVILNDNDM SISPPVGALN RHLARLMSGR FYAAARAGVE RVLSVAPPVL ELARKLEEHA
KGMVVPATLF EEFGFNYIGP IDGHDLDSLI PTLQNIRELR GPQFLHVVTK KGQGYKLAEA
DPVLYHGPGK FNPAEGIKPS PTPAKKTYTQ VFGEWLCDEA ERDSRVVGIT PAMREGSGMV
EFEKRFKDRY YDVGIAEQHA VTFAGGLATE GLKPVVAIYS TFLQRAYDQL IHDVALQNLP
VVFAIDRAGL VGADGATHAG AYDLAFMRCI PNMTIMAASD ENECRQMLHT ALQQPNPTAV
RYPRGAGTGV ATVKEFTEIP LGKGEVRRRT SQPEGKRVAI LAFGTMVAPS LAAGEELDAT
VANMRFVKPI DAALVRELAE THDYLVTVEE GCVMGGAGSA CVEALMESGV IRPVIQLGLP
DQFIDHGDPA KLLAQCGLDG AGIAKSIRER FLSPAADVAD QAKRVA
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