Gene Bamb_3109 details

Gene Information

• Locus tag: Bamb_3109
• Symbol: fliF
• ID: 4310801
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia ambifaria AMMD
• Kingdom: Bacteria
• Replicon accession: NC_008390
• Strand: +
• Start bp: 3429351
• End bp: 3431114
• Gene Length: 1764 bp
• Protein Length: 587 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 638150949
• Product: flagellar MS-ring protein
• Protein accession: YP_774999
• Protein GI: 115353160
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein
• TIGRFAM ID: [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF)

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATTCGC AGGCCAACTC GCTGATCAAC CCCGACGCCC GCACGGGCCT CGCCAGCCCG 
GTGCCAGGCG CCACCGCGGC CGCCGCGTTG CCGGGAGCAG GCGGCGCCGG CGCGGACTTC 
GGGTTCGGCG GTTTCGCGGA ACGCATCCCC GGCATCTCGC GGATGAAGGG CAACCCGAAG 
CTGCCGTTCG TGATCGCCGT CGCGTTCGCG ATCGCCGCGA TCACCGCGCT CGTGCTGTGG 
AGCCGCGCGC CCGACTATCG CGTGCTGTAC AGCAACCTGT CGGACCGCGA CGGCGGCGCG 
ATCATCGCCG CGCTCCAGCA GGCCAACGTT CCGTACAAGT TCGCCGACGC CGGCGGCGCG 
ATCCTCGTGC CGTCGAACCA GGTGCATGAA ACGCGCCTGA AGCTCGCCGC GCTGGGCCTG 
CCCAAGGGCG GCTCGGTCGG TTTCGAGCTG ATGGACAACC AGAAATTCGG CATCAGCCAG 
TTCGCCGAGC AGGTGAACTA CCAGCGCGCG CTCGAAGGCG AGCTGCAGCG CACGATCGAA 
TCGATCAACG CCGTGCGCGG CGCGCGCGTG CATCTCGCGA TCCCGAAGCC GTCGGTGTTC 
GTGCGCGACA AGGAAGCGCC GAGCGCGTCG GTGTTCGTCG ACCTCTACCC GGGCCGCGTG 
CTCGACGAGG GCCAGGTGCA GGCGATCACG CGGATGGTGT CGTCCGGCGT GCCCGACATG 
CCGGCGAAGA ACGTGACGAT CGTCGACCAG GACGGCAACC TGCTGACGCA GACCGCGTCG 
GCCTCCGGCC TCGACGCGAG CCAGCTCAAG TACGTGCAGC AGGTCGAGCG CAATACGCAG 
AAGCGCATCG ATTCGATCCT CGCGCCGATC TTCGGTACCG GCAACGCGCG CTCGCAGGTC 
AGCGCCGACA TCGATTTCTC GAAGCTCGAG CAGACCTCGG AAAGCTACAG CCCGAACGGC 
ACGCCGCAGC AGGCCGCGAT CCGCAGCCAG CAGACCAGCA GCGCAACCGA GCTCGCGCAG 
GGCGGCGCAT CGGGCGTGCC GGGCGCGCTG TCGAACACGC CGCCGCAGCC GGCCTCCGCG 
CCGATCGTCG CCGGCAACGG CCAGAACGGC GCGCAGTCGA CGCCCGTCAG CGACCGCAAG 
GACCAGACCA CCAACTACGA GCTCGACAAG ACGATCCGCC ACGTCGAGCA GCCGATGGGC 
AACGTGAAGC GGCTGTCGGT CGCCGTCGTC GTCAACTACC AGCCGGTCGC CGACGCGAAG 
GGCCACGTGA CGATGCAGCC GCTGCCGCCG CCCAAGCTCG CGCAGGTCGA GCAGCTCGTG 
AAGGACGCGA TGGGCTACGA CGAGAAGCGC GGCGACTCGG TGAACGTCGT GAACAGCGCG 
TTCTCGAGCG TCGGCGATCC GTACGCCGAC CTGCCGTGGT GGCGCCAGCC GGACATGATC 
GCGATGGCGA AGGAAGCCGC GAAGTGGCTC GGCATCGCGG CAGCCGCGGC GGCGCTCTAT 
TTCATGTTCG TGCGCCCGGC GATGCGCCGC GCGTTCCCGC CGCCCGAGCC GGTCGCCCCG 
GCGCTCGCGG CGCCGGACGA TCCGGTCGCA CTCGACGGCC TGCCCGCCCC GGACAGGGCC 
GACGAGCCCG ATCCGCTGCT GCTGGGCTTC GAGAACGAAA AGAACCGCTA CGAACGCAAC 
CTCGACTACG CGCGCACGAT CGCCCGCCAG GATCCGAAGA TCGTCGCCAC CGTCGTGAAG 
AACTGGGTGT CCGATGAACG CTGA 

 

Protein sequence

MDSQANSLIN PDARTGLASP VPGATAAAAL PGAGGAGADF GFGGFAERIP GISRMKGNPK 
LPFVIAVAFA IAAITALVLW SRAPDYRVLY SNLSDRDGGA IIAALQQANV PYKFADAGGA 
ILVPSNQVHE TRLKLAALGL PKGGSVGFEL MDNQKFGISQ FAEQVNYQRA LEGELQRTIE 
SINAVRGARV HLAIPKPSVF VRDKEAPSAS VFVDLYPGRV LDEGQVQAIT RMVSSGVPDM 
PAKNVTIVDQ DGNLLTQTAS ASGLDASQLK YVQQVERNTQ KRIDSILAPI FGTGNARSQV 
SADIDFSKLE QTSESYSPNG TPQQAAIRSQ QTSSATELAQ GGASGVPGAL SNTPPQPASA 
PIVAGNGQNG AQSTPVSDRK DQTTNYELDK TIRHVEQPMG NVKRLSVAVV VNYQPVADAK 
GHVTMQPLPP PKLAQVEQLV KDAMGYDEKR GDSVNVVNSA FSSVGDPYAD LPWWRQPDMI 
AMAKEAAKWL GIAAAAAALY FMFVRPAMRR AFPPPEPVAP ALAAPDDPVA LDGLPAPDRA 
DEPDPLLLGF ENEKNRYERN LDYARTIARQ DPKIVATVVK NWVSDER