| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_3091 |
|---|
| Symbol | |
|---|
| ID | 4310783 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | - |
|---|
| Start bp | 3412509 |
|---|
| End bp | 3413816 |
|---|
| Gene Length | 1308 bp |
|---|
| Protein Length | 435 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 638150931 |
|---|
| Product | general substrate transporter |
|---|
| Protein accession | YP_774981 |
|---|
| Protein GI | 115353142 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGACGA TTGCGAATTC AACGAAAACG GCCCGCCCCG AGCGTGCGCT GAACCGGCGC
GCGGTCGTGG CGGCCGTGAT CGGCAACGCG CTCGAGTGGT ACGACTTCAC GGTGTTCGGC
TTCATGACTG TCGTGATCGC CGAGCTGTTC TTCCCGACTT CCAGTGAATA TTCTTCGCTG
CTGCTGACCA CCGCGACGTT CGGCGTCGCA TTCTTCATGC GCCCGATCGG CGGCATCGTG
TTCGGGCTCT ATGCGGACCG CGCGGGCCGC AAGGCCGCGC TGTCGCTCGT GATCCTGCTG
ATGACGGCCG GCATCTTCCT GCTCGCGATC GCACCGCCCT ATGCGGCGAT CGGCATCGGC
GGCCCGCTGC TGATCGTGCT CGGCCGCCTG CTGCAGGGTT TCTCGGCCGG CGGCGAATTC
GGCAGCGCGA CCGCGCTGCT GATCGAAGCC GCGCCATTCT CGAAACGCGG CTTCTACGGC
AGCTGGCAGA TGGCGAGCCA GGCGGCCGCG CTGCTGATCG GCGCACTGGT CGGCGCGGCG
ATCACGCGCG GGCTGTCGCA CGACGCGCTG CGCAGCTGGG GCTGGCGCGT GCCGTTCATC
CTCGGGCTCG TGATCGGTCC GATCGGCTTC TATATCCGCC GTCATCTCGC CGATTCCGAA
GCATTCCTGC ATGCGCAACA AAGCGCGCGC CGCGCGACGC TCGGCGAAGT GTTCACGCGC
TATCCGCGCG AGGTGCTGTG CGGGCTCGGC TCGGTGATCG CGCTGACGGT CACGATCTAC
GTGCTGATTA GCTATCTGCC GACCTTCGCG GTGAAGCAGC TGAAGCTGCC GTATGCCGAA
TCGTTCTACG CGGTGATCAT CGGCAATCTG TTGCTGATGG TGCTGTCGCC GATCGCGGGC
GCATGGTCGG ACCGCATCGG CCGCAAGGGG CTGTCGCTGT GGTCGCTCGT GCTGACGCTC
GCGCTGATGT ATCCGCTGTT CGCGTGGCTC GACGCCGCGC CGAGCATCGG GCGGCTGATC
GCGGTGCAGG CCGTGCTGTC GGTGACGCTC GCGGGCTACT ACGGGCCGTT CGGCGCGATG
ATCGCCGAGC TGTTCCCGGC CAACGTGCGC TCGACCGGGC TGTCGATCGC GTACAACGTC
GCGGTGATGC TGTTCGGCGG GTTCGGGCAG TTCATCGTCA CGTGGCTGAT CAAGACGACG
GGCACGCCGC TCGCGCCCAC CTATTACGTG ATGGCGGGGC TCGCGCTGTC GATCGTCGCG
GTCGCGTTCG TGCCCGCGCG CAACGCGGAT CTCGACGCGC CGGACTGA
|
|---|
| Protein sequence | MATIANSTKT ARPERALNRR AVVAAVIGNA LEWYDFTVFG FMTVVIAELF FPTSSEYSSL
LLTTATFGVA FFMRPIGGIV FGLYADRAGR KAALSLVILL MTAGIFLLAI APPYAAIGIG
GPLLIVLGRL LQGFSAGGEF GSATALLIEA APFSKRGFYG SWQMASQAAA LLIGALVGAA
ITRGLSHDAL RSWGWRVPFI LGLVIGPIGF YIRRHLADSE AFLHAQQSAR RATLGEVFTR
YPREVLCGLG SVIALTVTIY VLISYLPTFA VKQLKLPYAE SFYAVIIGNL LLMVLSPIAG
AWSDRIGRKG LSLWSLVLTL ALMYPLFAWL DAAPSIGRLI AVQAVLSVTL AGYYGPFGAM
IAELFPANVR STGLSIAYNV AVMLFGGFGQ FIVTWLIKTT GTPLAPTYYV MAGLALSIVA
VAFVPARNAD LDAPD
|
|---|
| |