| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_3018 |
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| Symbol | |
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| ID | 4310500 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008390 |
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| Strand | + |
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| Start bp | 3337226 |
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| End bp | 3339064 |
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| Gene Length | 1839 bp |
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| Protein Length | 612 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 638150858 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_774908 |
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| Protein GI | 115353069 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.140333 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCGCGC CCCATCCTGA CTCGTCCGTT GCTCCCACCA CGCGCCTGAT CGCGGAGCGC
GCGCTCGCCG CCGTGTTCCA GCCGATCGTC GATCTCGGAT CGGGCACGGT CGTCGGCTAC
GAAGGCCTGA TCCGCGGCCC GAGCGGCACC GACCTCGAGC CGCCGGCCGC GTTGTTCGCG
CAGGCCGCCC GCGACGGCAC GACCATCGCA CTCGAGCAGG CGGCCGCGCT CGCCTGCCTC
GACGCGTTCG CGGCGCTCGG CTGCGACGGC AAGCTGTTCC TCAACTTCAG CGCGGGCACG
ATCGTGCAAC TCGTGCGCGA ACGCGAGCGC GTGCGGCAAC TGCTCGGCCG GGCCGGCGTC
GGCGCCGAGC GCATCGTGAT CGAGCTGACC GAGCAGACCG CGATGCCGGA CGTCGCGCGC
ATCGAGCCGG CGGTCGCGTC GCTGCGCGAC GCGGGCATCC AGTTCGCGCT CGACGACTAC
GGCACCGCGA ACGCAAGCAT GAACCTGTGG TTGCGCCTGC ACCCGGATGT CGTGAAGATC
GACCGCTTCT TCATCCACGA CATCGCGCGC GACCCGCTCA AGTTCGAGGC GGTCAGGGCG
ATGCAGCACT TCGCGCACGC GAGCGGCGCG CAGCTGATCG CGGAAGGCAT CGAGAACGCG
AGCGACCTGA TCGTCGTGCG CGACATGGGC ATCTGCTGCG TGCAGGGCTT CCTGCTCGGC
CGGCCGAACG CGCGGCCGTC GCCGGTCGTC GCGCCGGCCG CGCGCGACGC GATCCGCACC
CCGCACATCG CGGTGTTCCC CGGCGCGACG CGCACCGCGC GGCCGGCCGG CACGATCGCG
GCGAAGATGC TCGTGCCTGC GCCGGCGCTG CCGCGCGATG CAACCAGCAA CGACGTGCTC
GACCTGTTCA ACCGGATGCC CGGCCTGCAC GCGGTCGCGC TCGTCGAACG CGGGCGGCCG
GTCGCGCTCG TGAACCGGCG CGGCTTCATC GACCGCTTCA CGCTGCCGTA CCACCGCGAG
GTGTTCGGGA AGAAGCCGTG CCTGCAGTTC GCGAACGACG CGCCGCTGAT GATCGACAAC
GCGACGTCGG TCGAGCAGCT CGCGATGCTG CTCGCGAGCC ACGACCAGCG CTATCTCGCG
GACGGTTTCG TGATCACCGA ACACGGCCGC TACCTCGGGC TCGGCACCGG CGAGAGCCTC
GTGCGCGCGG TGACCGAGAT GCGCATCGAG GCCGCGCGCT ACGCGAATCC GCTGACCTTC
CTGCCCGGCA ACATCCCGAT CAGCGCGCAC ATCGACCGCC TGCTGGAGCG CGACGCCGGC
TTCCATGCGT GCTACGTCGA CCTGAACCAG TTCAAGCCGT TCAACGATCA GTACGGCTAC
TGGCAGGGCG ACGAAGTGCT GAAGTTCGCG GCGACGGTGC TCGCCGGCGT ATGCGATCCG
CAGCGGGATT TTCTCGGGCA CGTCGGCGGC GACGATTTCC TCGTGCTGTT CCAGCGCGAC
GACTGGCGCG CGCGGGCGAC CGACGCGATC GCGCGCTTCA ACGACGGCGC GCAGCGCTTC
TACACGCAGG CCGACCGGCT CGCGGGCGGG CTGCGCGGCG AGGACCGCCA CGGCAACCCC
GCGTTCTTCG GCTTCGTGAC GATGGCGATC GGCGCGGTCG GCGTGCCGGC AGGCGCGCAC
GGCGCGATGC GCTACGGCAG CGACGAGATC GCGTCGGTCG CGGCGCTCGC GAAGCGGCGG
GCGAAACAGC AGCCGGGCGG GCTCGCGGTC GTCGACCTCG ATGCGGGGCG CGCGGCGCTG
CGCGAGCGCG GGGAGCCGCC GCTCGCGGCG GCGGGTTGA
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| Protein sequence | MPAPHPDSSV APTTRLIAER ALAAVFQPIV DLGSGTVVGY EGLIRGPSGT DLEPPAALFA
QAARDGTTIA LEQAAALACL DAFAALGCDG KLFLNFSAGT IVQLVRERER VRQLLGRAGV
GAERIVIELT EQTAMPDVAR IEPAVASLRD AGIQFALDDY GTANASMNLW LRLHPDVVKI
DRFFIHDIAR DPLKFEAVRA MQHFAHASGA QLIAEGIENA SDLIVVRDMG ICCVQGFLLG
RPNARPSPVV APAARDAIRT PHIAVFPGAT RTARPAGTIA AKMLVPAPAL PRDATSNDVL
DLFNRMPGLH AVALVERGRP VALVNRRGFI DRFTLPYHRE VFGKKPCLQF ANDAPLMIDN
ATSVEQLAML LASHDQRYLA DGFVITEHGR YLGLGTGESL VRAVTEMRIE AARYANPLTF
LPGNIPISAH IDRLLERDAG FHACYVDLNQ FKPFNDQYGY WQGDEVLKFA ATVLAGVCDP
QRDFLGHVGG DDFLVLFQRD DWRARATDAI ARFNDGAQRF YTQADRLAGG LRGEDRHGNP
AFFGFVTMAI GAVGVPAGAH GAMRYGSDEI ASVAALAKRR AKQQPGGLAV VDLDAGRAAL
RERGEPPLAA AG
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