| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_2584 |
|---|
| Symbol | |
|---|
| ID | 4308919 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | + |
|---|
| Start bp | 2846915 |
|---|
| End bp | 2848384 |
|---|
| Gene Length | 1470 bp |
|---|
| Protein Length | 489 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 638150422 |
|---|
| Product | EmrB/QacA family drug resistance transporter |
|---|
| Protein accession | YP_774474 |
|---|
| Protein GI | 115352635 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0492879 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGCTG TCCCGCGCCC CCGGTCCGCC CCCATGTTCC AACCCCCGCC CGCCGCCGCT
CCCGGCGAAA AGAACCTCAC CGTGATGCTG TGGCTCGTCG CGACGGGCTT CTTCATGCAG
ACGCTCGATG CGACGATCGT CAACACGGCG CTGCCGTCGA TGGCCGTGAG TCTCGGCGAA
TCGCCGCTCC GGATGCAGTC GGTCGTGATC GCGTACTCGC TGACGATGGC GGTGATGATT
CCCGTTTCCG GCTGGCTCGC GGACACGTTC GGCACGCGGC GCGTGTTCTT CAGCGCGATC
CTGGTGTTCT CGCTCGGCTC GCTGCTGTGC GCGAACGCGC ATACGCTGCA GCAGCTCGTC
GTGTTCCGCG TCGTGCAGGG GGTGGGCGGC GCGATGCTGC TGCCGGTCGG GCGGCTCGCC
GTGCTGCGCA CGTTCCCGGC CGAACGCTAC CTGAGCGCGC TGTCGTTCGT CGCGATTCCC
GGGCTGATCG GGCCGCTGAT CGGGCCGACG CTCGGCGGCT GGCTCGTGAA GATCGCGTCG
TGGCACTGGA TCTTCCTGAT CAACGTGCCG GTCGGCGTCG CCGGCTGCAT CGCGACCTTC
TACTCGATGC CCGACTCGCG CAACCCGGCC GTCGGCCGCT TCGACCTGAA GGGCTATCTG
CTGCTGACGA TCGGGATGGT CGCGATCTCG CTGTCGCTCG ACGGGCTCGC CGATCTCGGC
ATGCAGCACG CGGCCGTGCT GGTACTGCTG ATCCTGAGCC TCGCATGCTT CGTCGCGTAC
GGACTGTACG CGGTGCGCGC GCCGCTGCCG ATCTTCTCGC TCGAGCTGTT CAAGATCCAT
ACGTTCAGCG TCGGCCTGCT CGGCAACCTG TTCGCGCGGA TCGGCAGCGG CGCGATGCCG
TACCTGATCC CGCTGCTGCT GCAGGTGAGC CTCGGCTATT CGGCGTTCGA GGCCGGGCTG
ATGATGCTGC CGGTCGCGGC GGCGGGGATG TTCTCGAAGC GGATCATCAC GCAGCTGATC
ACGCGGCACG GCTACCGCAA GGTGCTGCTC GTGAACACGA TCATGGTGGG CGTGATGATG
GCGAGCTTCG CGCTGATGCG CGACACGGTG CCCGTCTGGG TGAAGGTCGT GCACCTCGCG
CTGTTCGGCG GCTTCAACTC GATGCAGTTC ACCGCGATGA ACACGCTGAC GCTGAAGGAT
CTCGGCACCG GCGGCGCGAG CAGCGGCAAC AGCCTGTTCT CGCTCGTGCA GATGCTGTCG
ATGAGCCTTG GCGTCACCGT CGCCGGTGCG CTGCTCGCGA CCTTCACCGG GATGCTGCGC
ACGGTGACGC CGAGCAATAC GCTGCCCGCG TTCCATGCGA CCTTCATCTG CGTGGGGATC
ATCACGGCCG CGTCGGCGTG GATCTTCGCG CAACTCGCCC CCGAAATCCG CGGCCGCGCG
CAGAAGACCG ACCCGTCCGA ACGCGCGTGA
|
|---|
| Protein sequence | MAAVPRPRSA PMFQPPPAAA PGEKNLTVML WLVATGFFMQ TLDATIVNTA LPSMAVSLGE
SPLRMQSVVI AYSLTMAVMI PVSGWLADTF GTRRVFFSAI LVFSLGSLLC ANAHTLQQLV
VFRVVQGVGG AMLLPVGRLA VLRTFPAERY LSALSFVAIP GLIGPLIGPT LGGWLVKIAS
WHWIFLINVP VGVAGCIATF YSMPDSRNPA VGRFDLKGYL LLTIGMVAIS LSLDGLADLG
MQHAAVLVLL ILSLACFVAY GLYAVRAPLP IFSLELFKIH TFSVGLLGNL FARIGSGAMP
YLIPLLLQVS LGYSAFEAGL MMLPVAAAGM FSKRIITQLI TRHGYRKVLL VNTIMVGVMM
ASFALMRDTV PVWVKVVHLA LFGGFNSMQF TAMNTLTLKD LGTGGASSGN SLFSLVQMLS
MSLGVTVAGA LLATFTGMLR TVTPSNTLPA FHATFICVGI ITAASAWIFA QLAPEIRGRA
QKTDPSERA
|
|---|
| |