Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_2479 |
Symbol | |
ID | 4308866 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008390 |
Strand | - |
Start bp | 2733710 |
End bp | 2735989 |
Gene Length | 2280 bp |
Protein Length | 759 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 638150316 |
Product | lysine decarboxylase |
Protein accession | YP_774369 |
Protein GI | 115352530 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.506785 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGTTTC GTTTTCCCGT CGTCATCATC GACGAAGATT TCCGCTCCGA GAACATCTCG GGCTCCGGCA TCCGGGCGTT GGCCGAAGCG ATCGAGAAGG AGGGCGTCGA AGTCCTCGGC CTCACGAGCT ACGGCGATCT GACGTCGTTC GCGCAGCAGT CGAGCCGCGC GTCGTGCTTC ATCCTGTCGA TCGACGACGA CGAACTCATG CTCGGCGAAA CGGGCGCGGA CGGCGAGCTG CCCGAGCTGG CGACCGCGAT CATCGAGCTG CGCGCGTTCG TCACCGAAGT GCGCCGCCGC AATGCGGACA TCCCGATCTT CCTGTACGGC GAGACGCGCA CGTCGCGGCA TCTGCCGAAC GACATCCTGC GCGAGCTGCA CGGCTTCATC CACATGTTCG AGGACACGCC GGAGTTCGTC GCGCGCCACA TCATTCGCGA GGCGAAGGTC TATCTCGACT CGCTCGCGCC GCCGTTCTTC AAGGAGCTGG TCAAGTACGC GGACGAAGGC TCGTACTCGT GGCACTGCCC GGGCCACTCG GGCGGTGTCG CGTTCCTGAA GAACCCGCTC GGTCAGATGT TCCACCAGTT CTTCGGCGAG AACATGCTGC GCGCGGACGT CTGCAACGCG GTCGACGAAC TCGGCCAGCT GCTCGACCAC ACGGGCCCGG TCGCGGCATC CGAGCGCAAC GCGGCGCGCA TCTTCAGCGC GGATCACCTG TTCTTCGTAA CCAACGGCAC GTCGACGTCG AACAAGATCG TCTGGCACGC GACGGTCGCG CCCGGCGATA TCGTGCTGGT CGACCGCAAC TGCCACAAGT CGATCCTGCA CGCGATCACG ATGACGGGTG CGATTCCGGT GTTCCTCACG CCGACGCGCA ACCATTTCGG GATCATCGGG CCGATTCCGC GCGACGAATT CAAGCCGGAG AACATTCGCA AGAAGATCGA GGCGAACCCG TTCGCACGCG AAGCGCTGCG CGAGAACCCT GACCTCAAGC CGCGCATCCT GACGATCACG CAGAGCACGT ACGACGGCGT CGTCTACAAC GTCGAGATGA TCAAGGACCT GCTCGGCGAC CTGCTCGACA CGCTGCACTT CGACGAAGCG TGGCTGCCGC ATGCGACGTT CCACGACTTC TACCGCGACA TGCATGCGAT CGGCGACGGC CGTCCGCGCA CGGGCGCGCT TGTGTTCGCG ACGCACTCGA CGCACAAGCT GCTCGCGGGC ATCTCGCAGG CGTCGCAGAT CGTCGTGCAG GATTCCGAGA ACCGCACGTT CGACAAGCAC CGCTTCAACG AGGCGTACCT GATGCACACG TCGACGAGCC CGCAGTACGC GATCATCGCG TCGTGCGACG TCGCGGCCGC GATGATGGAG CCGCCGGGCG GCACCGCGCT CGTCGAGGAG TCGATCGCTG AGGCGATCGA CTTCCGCCGC GCGATGCGCA AGGTCGACGC CGAATACGGC GACGACTGGT TCTTCAGCGT GTGGGGCCCG GACGACCTGT CGGAAGAAGG CATCGGTTCG CGCGAGGACT GGATGCTGAA GCCGAACGAC CACTGGCACG GCTTCGGCCC GCTGGCGGAA GGCTTCAACA TGCTCGACCC GATCAAGGCG ACGATCATCA CGCCGGGGCT CGACGTCGAC GGCGAGTTCG GCGAGACGGG CATTCCGGCC GCGATCGTCA CGAAGTACCT GGCCGAGCAC GGGATCATCG TCGAGAAGAC CGGCCTGTAC TCGTTCTTCA TCATGTTCAC GATCGGCATC ACGAAGGGCC GCTGGAACTC GATGGTGACC GAGCTGCAGC AGTTCAAGGA CGACTACGAC AACAACCAGC CGCTGTGGCG CGTGCTGCCG GAATTCGTCG CGCAGCATCC GCGCTACGAG CGCGTCGGCC TGCGCGACCT GTGCACGCAG ATCCACGACG TGTACCGTGC GAACGACATC GCGCGCCTGA CGACGGAGAT GTACCTGTCG GACATGGAGC CGGCGCTGAA GCCGTCGGAC GCGTTCGCGA AGCTCGCGCA CCGCAAGATC GATCGCGTGC CGCTCGACGA GCTCGAAGGC CGCGTGACGA GCATCCTGCT GACGCCGTAC CCGCCGGGCA TTCCGCTGCT GATTCCGGGC GAGCGCTTCA ACAAGACGAT CGTGAACTAC CTGCGGTTCG CGCGCGACTT CAACGAACGC TTCCCGGGCT TCCATACCGA CATCCACGGC CTCGTCGCGG AAGAAATGAA CGGTCGCGTC GAGTACTTCG TCGACTGCGT GCGCGACTGA
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Protein sequence | MKFRFPVVII DEDFRSENIS GSGIRALAEA IEKEGVEVLG LTSYGDLTSF AQQSSRASCF ILSIDDDELM LGETGADGEL PELATAIIEL RAFVTEVRRR NADIPIFLYG ETRTSRHLPN DILRELHGFI HMFEDTPEFV ARHIIREAKV YLDSLAPPFF KELVKYADEG SYSWHCPGHS GGVAFLKNPL GQMFHQFFGE NMLRADVCNA VDELGQLLDH TGPVAASERN AARIFSADHL FFVTNGTSTS NKIVWHATVA PGDIVLVDRN CHKSILHAIT MTGAIPVFLT PTRNHFGIIG PIPRDEFKPE NIRKKIEANP FAREALRENP DLKPRILTIT QSTYDGVVYN VEMIKDLLGD LLDTLHFDEA WLPHATFHDF YRDMHAIGDG RPRTGALVFA THSTHKLLAG ISQASQIVVQ DSENRTFDKH RFNEAYLMHT STSPQYAIIA SCDVAAAMME PPGGTALVEE SIAEAIDFRR AMRKVDAEYG DDWFFSVWGP DDLSEEGIGS REDWMLKPND HWHGFGPLAE GFNMLDPIKA TIITPGLDVD GEFGETGIPA AIVTKYLAEH GIIVEKTGLY SFFIMFTIGI TKGRWNSMVT ELQQFKDDYD NNQPLWRVLP EFVAQHPRYE RVGLRDLCTQ IHDVYRANDI ARLTTEMYLS DMEPALKPSD AFAKLAHRKI DRVPLDELEG RVTSILLTPY PPGIPLLIPG ERFNKTIVNY LRFARDFNER FPGFHTDIHG LVAEEMNGRV EYFVDCVRD
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