Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_2346 |
Symbol | |
ID | 4309327 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008390 |
Strand | - |
Start bp | 2582276 |
End bp | 2584027 |
Gene Length | 1752 bp |
Protein Length | 583 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 638150180 |
Product | lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA |
Protein accession | YP_774236 |
Protein GI | 115352397 |
COG category | [V] Defense mechanisms |
COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.571332 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACGGCA CGGGCACGTC GCCGTTCACG GTTCTCAAGC GCCTGTGGCC GTACATCCGG CCGCTGATCG GCATCGTGGT GCTCGCCGTC GTCACGATGG GCGTCGTCGC GGCCACCGAA GCCGGGATTC CGGCGCTGCT CAAGCCGCTG CTCGACCACG GCTTCGGCTC GCACGGCAGC GATCGCGCGA AATGGTACGT GCCGATGGCC GTGATCGGCC TCGCGCTCGT GCGCGGCGTG TCGCAGTACA CATCGAATTA CCTGCTCAAC TACGTATCGA ACCGCATCCT GCTGCAGCTG CGGCTCGAAA TGTTCCAGCG GATGCTGCAC ACGGGCGCGT CGTTCTTCCA GCGCGAGACG GCGAGCACGG TGATCAACGC GATCGTGTTC GAGGTCAACC AGATCCTCGC GGTGCTGACC GGCGTGATGG TCACGCTCGT GCGCGACTCG CTGACGGTGA TGTTCCTGCT CGGCTACCTG TTCTACCTGA ACTGGCGGCT CACGCTGATC GTCGCGGTGA TCCTGCCGGG CATCGGCTGG CTCGTCAGCA AGATCAACCG CCGCCTGCGC CGCCTGAACC GCGAGCACCA GACGCTGACC AACGAGCTGT CGTACATCGT CGAGGAGACG GTCGGCGGCT ACAAGGTCGT CAAGGTGCAC AACGGCGAGA CGTACGAGAT GGACCGCTTC ACCGCGATGA GCAAGCGCCT GCGCGGCTAC GCGATGCGCA TGACGATCTC GGGCGGCCTC GCGCAGCCGC TGACGCAGTT CCTCGCGTCG ATCGCGCTCG CGGTCGTGAT CACGATCGCG GTCGTGCAGT CGACCAACGA TCAGACGACG GTCGGCGGCT TCGTCGCGTT CGTCACGTCG ATGCTGCTGG TGATTTCGCC GCTCAAGCAC CTGATCGACG TGAACCAGCC GCTGCAGCGC GGGATGACGG CCGCCGAGCT GATCTTCGGG CTGATCGACG AGCCGGGCGA GCCGCAGGGC GGCGGCCGTG CGCTGCCGCA CGCGCGCGGC GAGATCGAAT TCCGCGGCGT GTCGTTCGAC TACGGCGCCT CCGAGCGGCC GACGCTCGAC CGCATTTCGT TCAAGGTCGC GCCGGGCGAG ATGATCGCGC TCGCGGGGCC GTCGGGCAGC GGCAAGACGA CCCTCGTGAA CCTGCTGCCG CGCTTCTTCG ACCCCACGGG CGGCGCGATC CTGGTCGACG GCGTGCCGGT GGCCGACTAC GACCTGCACG CGCTGCGCGG CCAGATGGCG ATGGTCAGCC AGGACGTCGT GCTGTTCAAC GACACGATCG CCGCGAACGT CGCGTATGGC CAGACGCCCG ATCGTGCGCG CGTGCAGGCG GCACTCGAGG CCGCGAACCT TGCCGACGCG GTCGCCGCGA TGCCCGACGG GCTCGACACG CTGGTCGGCG GCAACGGGAT GCGTCTGTCG GGCGGCCAGC GGCAGCGGCT CGCGATCGCG CGCGCGATCT ACAAGGACGC GCCGATCCTG ATCCTCGACG AGGCGACCTC CGCGCTCGAT TCGGAGTCCG AGCGCCACGT GCAGGCCGCG CTCGAGCGGC TGATGGAAGG GCGCACGACG CTCGTGATCG CGCACCGGCT GTCGACGATC GAGCGTGCGG ACCGGATCCT CGTGCTCGAA GCCGGCAAGA TCGTCGAAGA GGGCAGCCAC GAAGAACTGC TGCGCCACGG CGGGCTGTAC GCGCACCTCC ACCGGATCCA GTACCAGCAG CAGGCGGCGT GA
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Protein sequence | MDGTGTSPFT VLKRLWPYIR PLIGIVVLAV VTMGVVAATE AGIPALLKPL LDHGFGSHGS DRAKWYVPMA VIGLALVRGV SQYTSNYLLN YVSNRILLQL RLEMFQRMLH TGASFFQRET ASTVINAIVF EVNQILAVLT GVMVTLVRDS LTVMFLLGYL FYLNWRLTLI VAVILPGIGW LVSKINRRLR RLNREHQTLT NELSYIVEET VGGYKVVKVH NGETYEMDRF TAMSKRLRGY AMRMTISGGL AQPLTQFLAS IALAVVITIA VVQSTNDQTT VGGFVAFVTS MLLVISPLKH LIDVNQPLQR GMTAAELIFG LIDEPGEPQG GGRALPHARG EIEFRGVSFD YGASERPTLD RISFKVAPGE MIALAGPSGS GKTTLVNLLP RFFDPTGGAI LVDGVPVADY DLHALRGQMA MVSQDVVLFN DTIAANVAYG QTPDRARVQA ALEAANLADA VAAMPDGLDT LVGGNGMRLS GGQRQRLAIA RAIYKDAPIL ILDEATSALD SESERHVQAA LERLMEGRTT LVIAHRLSTI ERADRILVLE AGKIVEEGSH EELLRHGGLY AHLHRIQYQQ QAA
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