Gene Bamb_2346 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_2346 
Symbol 
ID4309327 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008390 
Strand
Start bp2582276 
End bp2584027 
Gene Length1752 bp 
Protein Length583 aa 
Translation table11 
GC content68% 
IMG OID638150180 
Productlipid A ABC exporter, fused ATPase and inner membrane subunits MsbA 
Protein accessionYP_774236 
Protein GI115352397 
COG category[V] Defense mechanisms 
COG ID[COG1132] ABC-type multidrug transport system, ATPase and permease components 
TIGRFAM ID[TIGR02203] lipid A export permease/ATP-binding protein MsbA 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.571332 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGACGGCA CGGGCACGTC GCCGTTCACG GTTCTCAAGC GCCTGTGGCC GTACATCCGG 
CCGCTGATCG GCATCGTGGT GCTCGCCGTC GTCACGATGG GCGTCGTCGC GGCCACCGAA
GCCGGGATTC CGGCGCTGCT CAAGCCGCTG CTCGACCACG GCTTCGGCTC GCACGGCAGC
GATCGCGCGA AATGGTACGT GCCGATGGCC GTGATCGGCC TCGCGCTCGT GCGCGGCGTG
TCGCAGTACA CATCGAATTA CCTGCTCAAC TACGTATCGA ACCGCATCCT GCTGCAGCTG
CGGCTCGAAA TGTTCCAGCG GATGCTGCAC ACGGGCGCGT CGTTCTTCCA GCGCGAGACG
GCGAGCACGG TGATCAACGC GATCGTGTTC GAGGTCAACC AGATCCTCGC GGTGCTGACC
GGCGTGATGG TCACGCTCGT GCGCGACTCG CTGACGGTGA TGTTCCTGCT CGGCTACCTG
TTCTACCTGA ACTGGCGGCT CACGCTGATC GTCGCGGTGA TCCTGCCGGG CATCGGCTGG
CTCGTCAGCA AGATCAACCG CCGCCTGCGC CGCCTGAACC GCGAGCACCA GACGCTGACC
AACGAGCTGT CGTACATCGT CGAGGAGACG GTCGGCGGCT ACAAGGTCGT CAAGGTGCAC
AACGGCGAGA CGTACGAGAT GGACCGCTTC ACCGCGATGA GCAAGCGCCT GCGCGGCTAC
GCGATGCGCA TGACGATCTC GGGCGGCCTC GCGCAGCCGC TGACGCAGTT CCTCGCGTCG
ATCGCGCTCG CGGTCGTGAT CACGATCGCG GTCGTGCAGT CGACCAACGA TCAGACGACG
GTCGGCGGCT TCGTCGCGTT CGTCACGTCG ATGCTGCTGG TGATTTCGCC GCTCAAGCAC
CTGATCGACG TGAACCAGCC GCTGCAGCGC GGGATGACGG CCGCCGAGCT GATCTTCGGG
CTGATCGACG AGCCGGGCGA GCCGCAGGGC GGCGGCCGTG CGCTGCCGCA CGCGCGCGGC
GAGATCGAAT TCCGCGGCGT GTCGTTCGAC TACGGCGCCT CCGAGCGGCC GACGCTCGAC
CGCATTTCGT TCAAGGTCGC GCCGGGCGAG ATGATCGCGC TCGCGGGGCC GTCGGGCAGC
GGCAAGACGA CCCTCGTGAA CCTGCTGCCG CGCTTCTTCG ACCCCACGGG CGGCGCGATC
CTGGTCGACG GCGTGCCGGT GGCCGACTAC GACCTGCACG CGCTGCGCGG CCAGATGGCG
ATGGTCAGCC AGGACGTCGT GCTGTTCAAC GACACGATCG CCGCGAACGT CGCGTATGGC
CAGACGCCCG ATCGTGCGCG CGTGCAGGCG GCACTCGAGG CCGCGAACCT TGCCGACGCG
GTCGCCGCGA TGCCCGACGG GCTCGACACG CTGGTCGGCG GCAACGGGAT GCGTCTGTCG
GGCGGCCAGC GGCAGCGGCT CGCGATCGCG CGCGCGATCT ACAAGGACGC GCCGATCCTG
ATCCTCGACG AGGCGACCTC CGCGCTCGAT TCGGAGTCCG AGCGCCACGT GCAGGCCGCG
CTCGAGCGGC TGATGGAAGG GCGCACGACG CTCGTGATCG CGCACCGGCT GTCGACGATC
GAGCGTGCGG ACCGGATCCT CGTGCTCGAA GCCGGCAAGA TCGTCGAAGA GGGCAGCCAC
GAAGAACTGC TGCGCCACGG CGGGCTGTAC GCGCACCTCC ACCGGATCCA GTACCAGCAG
CAGGCGGCGT GA
 
Protein sequence
MDGTGTSPFT VLKRLWPYIR PLIGIVVLAV VTMGVVAATE AGIPALLKPL LDHGFGSHGS 
DRAKWYVPMA VIGLALVRGV SQYTSNYLLN YVSNRILLQL RLEMFQRMLH TGASFFQRET
ASTVINAIVF EVNQILAVLT GVMVTLVRDS LTVMFLLGYL FYLNWRLTLI VAVILPGIGW
LVSKINRRLR RLNREHQTLT NELSYIVEET VGGYKVVKVH NGETYEMDRF TAMSKRLRGY
AMRMTISGGL AQPLTQFLAS IALAVVITIA VVQSTNDQTT VGGFVAFVTS MLLVISPLKH
LIDVNQPLQR GMTAAELIFG LIDEPGEPQG GGRALPHARG EIEFRGVSFD YGASERPTLD
RISFKVAPGE MIALAGPSGS GKTTLVNLLP RFFDPTGGAI LVDGVPVADY DLHALRGQMA
MVSQDVVLFN DTIAANVAYG QTPDRARVQA ALEAANLADA VAAMPDGLDT LVGGNGMRLS
GGQRQRLAIA RAIYKDAPIL ILDEATSALD SESERHVQAA LERLMEGRTT LVIAHRLSTI
ERADRILVLE AGKIVEEGSH EELLRHGGLY AHLHRIQYQQ QAA