| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_2164 |
|---|
| Symbol | |
|---|
| ID | 4311029 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | - |
|---|
| Start bp | 2376166 |
|---|
| End bp | 2376705 |
|---|
| Gene Length | 540 bp |
|---|
| Protein Length | 179 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 638149989 |
|---|
| Product | BadM/Rrf2 family transcriptional regulator |
|---|
| Protein accession | YP_774054 |
|---|
| Protein GI | 115352215 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1959] Predicted transcriptional regulator |
|---|
| TIGRFAM ID | [TIGR00738] rrf2 family protein (putative transcriptional regulator)
[TIGR02010] iron-sulfur cluster assembly transcription factor IscR |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.266541 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGACTCA CCACCAAAGG CCGTTTCGCC GTCACGGCGA TGATTGACTT GGCACTGCGC
CAGGAGCAGG GCCCGGTGAC GCTTGCAGGC ATCAGCCAGC GCCAGCGGAT TTCGCTCTCG
TATCTCGAAC AGCTGTTCGG GAAGCTGCGC AGGCATGAAA TCGTCGAATC CGTGCGCGGC
CCGGGCGGCG GCTACAACCT CGCGCGCCGC GCGCAGGACG TCACCGTCGC CGACATCATC
ATCGCGGTCG ATGAACCGCT CGACGCCACG CAGTGCGGCG GCAAAGGCAC GTGCGACGGC
TCGAAGCAGC CCGACGGCCA TTGCATGACG CACGAGCTGT GGTCGACCCT GAACCAGAAA
ATGGTCGAAT ACCTCGATTC GGTGTCGCTG CAGGATCTCG TCGATCAGCA GCGCGCACGC
GAGGGCGCCC CCGCGGTGCT GCGCGACCGG CGCACGCCGG AGCCCGTCGC GGCGCCGGCC
GAACCGGTGC GCACGATGCC GCTCGGTCCC AATTCGGTGT TCAACATCGC GAGTTCGTGA
|
|---|
| Protein sequence | MRLTTKGRFA VTAMIDLALR QEQGPVTLAG ISQRQRISLS YLEQLFGKLR RHEIVESVRG
PGGGYNLARR AQDVTVADII IAVDEPLDAT QCGGKGTCDG SKQPDGHCMT HELWSTLNQK
MVEYLDSVSL QDLVDQQRAR EGAPAVLRDR RTPEPVAAPA EPVRTMPLGP NSVFNIASS
|
|---|
| |