| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_2062 |
|---|
| Symbol | dapD |
|---|
| ID | 4311635 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | + |
|---|
| Start bp | 2263687 |
|---|
| End bp | 2264514 |
|---|
| Gene Length | 828 bp |
|---|
| Protein Length | 275 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 638149879 |
|---|
| Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
|---|
| Protein accession | YP_773952 |
|---|
| Protein GI | 115352113 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
|---|
| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCAAC AACTTCAGCA AATCATCGAT ACCGCCTGGG AAAACCGCGC CGAGCTGTCG
CCGAAGGCCG CGCCCGCCGA CGTCCGCGAA GCCGTCGCTC ATGCGCTCGA GCAACTCGAT
AAGGGCGCAC TGCGCGTCGC CGAGAAGATC GACGGCAACT GGACCGTGCA CCAGTGGCTG
AAGAAGGCCG TGCTGCTGTC GTTCCGCCTG GAGGACAACG CGCCGATGCC TGCCGGCGGC
TACTCGCAGT TCTACGACAA GGTGCCGTCG AAGTTCGCGA ACTACACCGC TGAAGACTTC
GCCGCGGGCG GCTTCCGCGT CGTGCCGCCG GCCATCGCGC GCCGCGGCTC GTTCATCGCG
AAGAACGTCG TGCTGATGCC GTCGTACACC AACATCGGCG CGTACGTCGA CGAAGGCACG
ATGGTCGACA CGTGGGCCAC GGTCGGTTCG TGCGCGCAGA TCGGCAAGAA CGTGCACCTG
TCGGGCGGCG TCGGCATCGG CGGCGTGCTC GAACCGCTGC AGGCGAACCC CGTCATCATC
GAAGACAACT GCTTCATCGG CGCGCGCTCG GAAGTCGTCG AAGGCGTGAT CGTCGAGGAG
AACTCGGTGA TCTCGATGGG CGTGTACCTC GGCCAGAGCA CCAAGATCTA CGATCGCGAA
ACGGGCGAAG TCAGCTACGG CCGCATCCCG GCCGGCTCGG TCGTCGTGGC CGGCAACCTG
CCGTCGAAGG ACGGCTCGCA CAGCCTGTAC TGCGCGGTGA TCGTGAAGAA AGTCGACGCG
AAGACCCGCG CGAAGGTCGG CCTGAACGAG CTGCTGCGAG GCGACTGA
|
|---|
| Protein sequence | MSQQLQQIID TAWENRAELS PKAAPADVRE AVAHALEQLD KGALRVAEKI DGNWTVHQWL
KKAVLLSFRL EDNAPMPAGG YSQFYDKVPS KFANYTAEDF AAGGFRVVPP AIARRGSFIA
KNVVLMPSYT NIGAYVDEGT MVDTWATVGS CAQIGKNVHL SGGVGIGGVL EPLQANPVII
EDNCFIGARS EVVEGVIVEE NSVISMGVYL GQSTKIYDRE TGEVSYGRIP AGSVVVAGNL
PSKDGSHSLY CAVIVKKVDA KTRAKVGLNE LLRGD
|
|---|
| |