| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_2013 |
|---|
| Symbol | |
|---|
| ID | 4309055 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | + |
|---|
| Start bp | 2209003 |
|---|
| End bp | 2210286 |
|---|
| Gene Length | 1284 bp |
|---|
| Protein Length | 427 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638149830 |
|---|
| Product | conjugation TrbI family protein |
|---|
| Protein accession | YP_773903 |
|---|
| Protein GI | 115352064 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2948] Type IV secretory pathway, VirB10 components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAGG ACGACACTCC CGACCTCGCC GCGCCGCAGG CGGCGGGCAA GATCGCGCCC
GAGGCGGTGG CGCTGCGCGC CCTGCCGCGC CCGGTCACGC GCCTGAATCG GCGCACGCTG
GCCATCCTCA CCGGCGGCCT GTCGGTCGCC GTACTCGGCG CGCTGATGTG GTCGCTGCAA
CCACAGCGGC GCGGGGCCAA CGAGCAGGCC GAGCTTTACA ACGTGGATCG CGTCTCCAAG
TCCGAAGGAT TGGACGCGCT GCCGGCGGAT TACTCCAAGC TGCCGTCGGC CTTGCCACCC
ACGGTACCCG AGCTGGGGCC GCCGCTGCCG GGCGATCTTG GCCCGGCCAT CGTCAAGTCG
CAGCAGCCGG TGACGGCCGC CTATGCGGCC CCTGGCAACG ACCCGAACGA TGCGCTGCGC
AAGGAAGCCG AAGCGGCCGC GGGTTCATCG GTGTTCTTTC GCTCTGGCAC GCAGAAGGCC
GCGCCGGTGG CGCAGTCGCA GGCTACCGCC GCGCCGGGCT TCGCTGCCAA TGCGGCGTTC
GACCCGATGG CGGCCGGGCC AGCCTCCACA GCGGCGCAGC CCGCCGACCT GACGGCGGTA
CAGAACCGGC AAGACCAGAA AGAGGCATTC CAGAAAGCCG GAACCACGGA AACCCGTAAT
TCCGGCAACC TGGCCCTGCC GGCTTCGCCG TATCAGGTGA TGGCCGGGAC GGTCATCGCC
GGTGCGCTGG TGACGGGCAT CAAGTCGGAT TTGCCGGGCG ATGTGATCGC CACGGTGACG
GAGCCGGTCT ATGACACGGC CACCGGGCGC TTTCTGCTGA TCCCGCAGGG TTCACGCATC
CTGGGCCGCT ACAACAGCCA GGTCAGCTAC GGACAAAGCC GCGTTCAAGT CGTCTGGAAC
CGGATCATCC TGCCCGACAC GTCTTCGCTG ACGCTCGACA ACTTGGTCGG AGCCGACCCG
GCTGGCTATG CCGGGCTGGA AGATGACGTG GACTACCACT GGGGCCGCAT CTTCGCCGGC
GCGGCGCTGA CCACGCTGCT GGGCGTCGGC GCCGAGCTGG CCGCGCCCGA GAACCGCCAG
GACGGCGACC GCATCATCAT CGCCGGGCGC GACAGCGCGC AGGACAGCAT CAACCAGGTC
GGCCAGGAGC TGACCCGGCG CAACATGAAC ATCCAGCCGA CGCTGACCGA GCGGCCGGGC
CTACCGGTTC GCGTCATCGC CAACCGCGAC TTGGTACTGC GGCCCTACCA GCCATTGTTC
TTCAACAAAG GGACTTCGCG ATGA
|
|---|
| Protein sequence | MSQDDTPDLA APQAAGKIAP EAVALRALPR PVTRLNRRTL AILTGGLSVA VLGALMWSLQ
PQRRGANEQA ELYNVDRVSK SEGLDALPAD YSKLPSALPP TVPELGPPLP GDLGPAIVKS
QQPVTAAYAA PGNDPNDALR KEAEAAAGSS VFFRSGTQKA APVAQSQATA APGFAANAAF
DPMAAGPAST AAQPADLTAV QNRQDQKEAF QKAGTTETRN SGNLALPASP YQVMAGTVIA
GALVTGIKSD LPGDVIATVT EPVYDTATGR FLLIPQGSRI LGRYNSQVSY GQSRVQVVWN
RIILPDTSSL TLDNLVGADP AGYAGLEDDV DYHWGRIFAG AALTTLLGVG AELAAPENRQ
DGDRIIIAGR DSAQDSINQV GQELTRRNMN IQPTLTERPG LPVRVIANRD LVLRPYQPLF
FNKGTSR
|
|---|
| |