| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_2004 |
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| Symbol | |
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| ID | 4309046 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008390 |
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| Strand | + |
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| Start bp | 2200631 |
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| End bp | 2201677 |
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| Gene Length | 1047 bp |
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| Protein Length | 348 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 638149821 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_773894 |
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| Protein GI | 115352055 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | [TIGR02782] P-type conjugative transfer ATPase TrbB |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGCCG TTCCACAGAT CCCGCCAGAA CCACGCTCGT CGGCCACCAC TTCACAGAAT
CGCCGCATCC AGATGCTGCG CACGGCAATG GGGCCGCTGA TCGCCGCCGC GCTCGAAGAC
CCGGACGTGG TGGAAATCAT GCTCAACCCC GACCGCAGCC TATGGGTCGA TCGGCTGTCG
TCGGGCCGTG CGCCGCTGGG CGTCGAACTG CCCGAGGCCG ATGGCGAACG CATCATTCGC
CTGGTGGCCG CCCACGTCGG TGCAGAGGTG CATCGCGGCC GACCATTGCT GACCGCCGAG
CTGCCCGAAA CCGGCGAGCG GTTCGAGGGC ATCCTGCCCC CGGCCGCACC CGGCCCGGCC
TTCGCGCTGC GCAAGCGCGC CGTGAGCATC ATCGGCCTGG ATCGCTACGT CGCCGACGGC
ATCCTGACTG CCGGCCAGGC CGACTTCCTG CGCCGCGCCG TGCGCGAGCG CCAGAACATC
CTGATCGCCG GCGGCACCAG TACCGGCAAG ACCACGCTCG CCAACGCGCT GCTGGCCGAG
ATCGCCGCCA CCGGTGACCG CGTGCTGGTG CTCGAAGACA CCATCGAGCT GCAATGCGCC
GCCCGCGACC ATGTGCCGCT GCGCACGCGC GCGGGCGTGG TGTCGATGCA GGAGCTGGTG
CGCGCCACGA TGCGCCTGCG CCCCGACCGC GTGATCGTCG GCGAGGTGCG CGGCGGCGAG
GCGCTTGATC TCATCAAGGT GTGGGGCACC GGCCACCCCG GCGGCATCGC CACGATTCAC
GCCGGTTCCG CCTTGGGCGC GCTGCTGCGC CTGGAGCAAC TGATTCTCGA AGTGGCGGTG
AATCCGCCGC GCGCGTTGAT CGCCGAGGCC ATCAACGTCG TCATCCACAT CGCCGGGCGT
GGCCGCAAGC GCCACGTCGA AAGCATCGCA CGCGTCGTCG GTTTCGACGG CGCGGGCTAT
CGCATGGCGG ATGCGCTGGA AATGCCGTTT CCCGAGCTGC CGCCAGTTCC TTCCCCGTCC
CCTGAACCCT CTGGAGAACT GCCATGA
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| Protein sequence | MSAVPQIPPE PRSSATTSQN RRIQMLRTAM GPLIAAALED PDVVEIMLNP DRSLWVDRLS
SGRAPLGVEL PEADGERIIR LVAAHVGAEV HRGRPLLTAE LPETGERFEG ILPPAAPGPA
FALRKRAVSI IGLDRYVADG ILTAGQADFL RRAVRERQNI LIAGGTSTGK TTLANALLAE
IAATGDRVLV LEDTIELQCA ARDHVPLRTR AGVVSMQELV RATMRLRPDR VIVGEVRGGE
ALDLIKVWGT GHPGGIATIH AGSALGALLR LEQLILEVAV NPPRALIAEA INVVIHIAGR
GRKRHVESIA RVVGFDGAGY RMADALEMPF PELPPVPSPS PEPSGELP
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