Gene Bamb_1938 details

Gene Information

• Locus tag: Bamb_1938
• Symbol: mscL
• ID: 4310176
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia ambifaria AMMD
• Kingdom: Bacteria
• Replicon accession: NC_008390
• Strand: +
• Start bp: 2137651
• End bp: 2138082
• Gene Length: 432 bp
• Protein Length: 143 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 638149755
• Product: large-conductance mechanosensitive channel
• Protein accession: YP_773828
• Protein GI: 115351989
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1970] Large-conductance mechanosensitive channel
• TIGRFAM ID: [TIGR00220] large conductance mechanosensitive channel protein

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCATAA TCAAGGAATT CAAGGAGTTC GCCGTCAAAG GCAACGTGAT GGATCTCGCC 
GTCGGCGTGA TCATCGGCGG CGCGTTCTCG AAGATCGTCG ACTCGGTCGT GAAAGACCTC 
ATCATGCCGG TGATCGGCGT GCTGACCGGC GGTCTGGATT TCTCGAACAA GTTCGTTCTG 
CTCGGCACCA TCCCCCCGAC GTTCAAGGGT AATCCCGATT CGTTCAAGGA CCTGCAGGCC 
GCGGGCGTCG CCGCGTTCGG CTACGGCTCG TTCATCACCG TGGCGATCAA CTTCGTGATC 
CTTGCGTTCA TCATTTTCCT GATGGTGAAA TTCATCAACA AGCTGCGCAA GCCGGAAGAA 
GCCGCGCCGG CCGCGACGCC GGAAGACATC GTGCTGCTGC GCGAGATCCG CGATTCGCTC 
AAGCAACGCT GA 

 

Protein sequence

MSIIKEFKEF AVKGNVMDLA VGVIIGGAFS KIVDSVVKDL IMPVIGVLTG GLDFSNKFVL 
LGTIPPTFKG NPDSFKDLQA AGVAAFGYGS FITVAINFVI LAFIIFLMVK FINKLRKPEE 
AAPAATPEDI VLLREIRDSL KQR