Gene Bamb_1731 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_1731 
Symbol 
ID4309813 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008390 
Strand
Start bp1912883 
End bp1914100 
Gene Length1218 bp 
Protein Length405 aa 
Translation table11 
GC content70% 
IMG OID638149545 
ProductRluA family pseudouridine synthase 
Protein accessionYP_773621 
Protein GI115351782 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0564] Pseudouridylate synthases, 23S RNA-specific 
TIGRFAM ID[TIGR00005] pseudouridine synthase, RluA family 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.895388 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCCGTT CAAGTTCGCA GAATGCCCCG CGGGGCAAGT CAAATCGCGA AGATTATAGC 
CCAAGCGATC GGCCCGCCGA CGCCGCATCG GGGGATTCTC CCGATGACGG CCTGGCCGCA
GGCGCGATGC AACCGCCTGT CGTGCCGTCC GCGGCGGCCG ATGAGACGCC GCGCGTCGTC
GAAGTGCCGC TGTCGCTCGC GGGCGAACGC CTGGACAAGG CGCTTGCCCA GCTATTCCCC
GAATTCTCCC GCAGCCGCCT GCAGAGCTGG ATCGAGGCGC AGCGCGTGCT GATCGACGGC
GCGCCGGCGA AGATCCGCCA GCCGGTGCCG CTCGGCGCCA GGATCGAGCT CGTGCCCGAC
CTGCTGCCGG AGCAGCTGGC GTTCACGCCG GAGCCGGTGC CGCTCGACGT GATCTACGAG
GACGACGCGC TCCTCGTCAT CAACAAGCCG GCCGGCGTCG TCGTCCATCC CGCCGCCGGC
AACTGGAGCG GCACGATCCT CAACGGGCTG CTGCATCGCT ATGGCGACGC CGCGGCCGGC
CTGCCGCGTG CCGGGATCGT GCACCGGCTC GACAAGGAAA CGTCCGGCCT GATGGTGGTC
GCACGCACGC TTGCCGCGCA GACCGACCTC GTGCGCCAGC TGCAGGCGCG CACGGTGAAG
CGCCGCTATT TCGCGCTCGT GTGGGGCACG ATGCCCGAAG ACGGCACGAT CGACGCGCCG
ATCGGCCGCG ATCCGCGCGA GCGCACGCGC ATGGCCGTCG TCACCGGTGC GTCGGGCAAG
CCCGCGCGCA CGCATTTCCG TACGGTTGAC ACATGCCTGT GGCAACGTCA GCCGGTGTCC
GCGATCCAGT GCGACCTCGA AACCGGCCGC ACGCACCAGA TCCGCGTGCA CTGCGCGCAT
GTCGGGCATC CGCTGCTCGG CGATCCGGTG TACGGCCGCG CGCGCGGCAA GCGCTCGGTC
GCGCCGCTGC CGGACGGGTT CGCGCGGCAG GCGCTGCATG CGTGGCGGCT CGGCCTCGTG
CATCCGCTCA CGGGCAAGAC GATGCAGTGG CGCTGCCCGT TGCCGGACGA CATGAACGCG
CTCATCGCGG CGCTCGGTTT CGGGCAGGCC AGCGAGGAAT TCGACGATGA CGAAGGCGTC
TACGACGATG ACGATTTCGC CGGCGAATAT CAGGATTACG ACGACGAGTC GGATCCGGAC
GACGACGAGG AGGAGTGA
 
Protein sequence
MTRSSSQNAP RGKSNREDYS PSDRPADAAS GDSPDDGLAA GAMQPPVVPS AAADETPRVV 
EVPLSLAGER LDKALAQLFP EFSRSRLQSW IEAQRVLIDG APAKIRQPVP LGARIELVPD
LLPEQLAFTP EPVPLDVIYE DDALLVINKP AGVVVHPAAG NWSGTILNGL LHRYGDAAAG
LPRAGIVHRL DKETSGLMVV ARTLAAQTDL VRQLQARTVK RRYFALVWGT MPEDGTIDAP
IGRDPRERTR MAVVTGASGK PARTHFRTVD TCLWQRQPVS AIQCDLETGR THQIRVHCAH
VGHPLLGDPV YGRARGKRSV APLPDGFARQ ALHAWRLGLV HPLTGKTMQW RCPLPDDMNA
LIAALGFGQA SEEFDDDEGV YDDDDFAGEY QDYDDESDPD DDEEE