Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_1731 |
Symbol | |
ID | 4309813 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008390 |
Strand | - |
Start bp | 1912883 |
End bp | 1914100 |
Gene Length | 1218 bp |
Protein Length | 405 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 638149545 |
Product | RluA family pseudouridine synthase |
Protein accession | YP_773621 |
Protein GI | 115351782 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.895388 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCCGTT CAAGTTCGCA GAATGCCCCG CGGGGCAAGT CAAATCGCGA AGATTATAGC CCAAGCGATC GGCCCGCCGA CGCCGCATCG GGGGATTCTC CCGATGACGG CCTGGCCGCA GGCGCGATGC AACCGCCTGT CGTGCCGTCC GCGGCGGCCG ATGAGACGCC GCGCGTCGTC GAAGTGCCGC TGTCGCTCGC GGGCGAACGC CTGGACAAGG CGCTTGCCCA GCTATTCCCC GAATTCTCCC GCAGCCGCCT GCAGAGCTGG ATCGAGGCGC AGCGCGTGCT GATCGACGGC GCGCCGGCGA AGATCCGCCA GCCGGTGCCG CTCGGCGCCA GGATCGAGCT CGTGCCCGAC CTGCTGCCGG AGCAGCTGGC GTTCACGCCG GAGCCGGTGC CGCTCGACGT GATCTACGAG GACGACGCGC TCCTCGTCAT CAACAAGCCG GCCGGCGTCG TCGTCCATCC CGCCGCCGGC AACTGGAGCG GCACGATCCT CAACGGGCTG CTGCATCGCT ATGGCGACGC CGCGGCCGGC CTGCCGCGTG CCGGGATCGT GCACCGGCTC GACAAGGAAA CGTCCGGCCT GATGGTGGTC GCACGCACGC TTGCCGCGCA GACCGACCTC GTGCGCCAGC TGCAGGCGCG CACGGTGAAG CGCCGCTATT TCGCGCTCGT GTGGGGCACG ATGCCCGAAG ACGGCACGAT CGACGCGCCG ATCGGCCGCG ATCCGCGCGA GCGCACGCGC ATGGCCGTCG TCACCGGTGC GTCGGGCAAG CCCGCGCGCA CGCATTTCCG TACGGTTGAC ACATGCCTGT GGCAACGTCA GCCGGTGTCC GCGATCCAGT GCGACCTCGA AACCGGCCGC ACGCACCAGA TCCGCGTGCA CTGCGCGCAT GTCGGGCATC CGCTGCTCGG CGATCCGGTG TACGGCCGCG CGCGCGGCAA GCGCTCGGTC GCGCCGCTGC CGGACGGGTT CGCGCGGCAG GCGCTGCATG CGTGGCGGCT CGGCCTCGTG CATCCGCTCA CGGGCAAGAC GATGCAGTGG CGCTGCCCGT TGCCGGACGA CATGAACGCG CTCATCGCGG CGCTCGGTTT CGGGCAGGCC AGCGAGGAAT TCGACGATGA CGAAGGCGTC TACGACGATG ACGATTTCGC CGGCGAATAT CAGGATTACG ACGACGAGTC GGATCCGGAC GACGACGAGG AGGAGTGA
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Protein sequence | MTRSSSQNAP RGKSNREDYS PSDRPADAAS GDSPDDGLAA GAMQPPVVPS AAADETPRVV EVPLSLAGER LDKALAQLFP EFSRSRLQSW IEAQRVLIDG APAKIRQPVP LGARIELVPD LLPEQLAFTP EPVPLDVIYE DDALLVINKP AGVVVHPAAG NWSGTILNGL LHRYGDAAAG LPRAGIVHRL DKETSGLMVV ARTLAAQTDL VRQLQARTVK RRYFALVWGT MPEDGTIDAP IGRDPRERTR MAVVTGASGK PARTHFRTVD TCLWQRQPVS AIQCDLETGR THQIRVHCAH VGHPLLGDPV YGRARGKRSV APLPDGFARQ ALHAWRLGLV HPLTGKTMQW RCPLPDDMNA LIAALGFGQA SEEFDDDEGV YDDDDFAGEY QDYDDESDPD DDEEE
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