Gene Bamb_1541 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_1541 
Symbol 
ID4311801 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008390 
Strand
Start bp1707212 
End bp1709464 
Gene Length2253 bp 
Protein Length750 aa 
Translation table11 
GC content67% 
IMG OID638149357 
ProductTonB-dependent siderophore receptor 
Protein accessionYP_773433 
Protein GI115351594 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG4774] Outer membrane receptor for monomeric catechols 
TIGRFAM ID[TIGR01783] TonB-dependent siderophore receptor 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0957373 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAGTGGG CAACAGGCAC GCGTTTGCGT GCGATCGCGG CCGCGGCGAG CGTGACGTTC 
GGGATGGCGG CAGGGCACGC ATTCGCGCAG ACGGCGCCGG CCGTGAACGC AGGCGCCGCG
ACGTCGACTG ACAGTGCGCG CAACGGTGCG GCGGCGAGTG CGGGGGCCAG TGCGCCGAAT
GGCCCGGCGA CCGGCACGCT GCCGGCGATC AACGTCAACG CGGGCTCGGA AGGCGACGGC
ACGGTCGGTC TCGTCGCGAA GCGCAGCCGG ACCGGCACCA AGACCGATAC GTCGATCAAT
GAAATTCCGC AGACGATCAA CGTCGTCACC GCGCAGCAGA TCGAGATGAC CGGCGCGACC
GACGTGAACG CGGCGCTGCG CTACGTGCCG GGCTTCTCGT CGTACGGCTC GGACAACCGT
TCCGACTGGT ACGCGGCGCT GCGCGGCTTC ACGCCGACGG CCTACGTGAA CGGCCTGCAG
GTGCCGAATA CACTGAACCT GTCGAGCTGG CGCGTCGATC CGTACATGAT CGACAGCATC
ACCGTGCTGC GCGGGCCGAC GTCGGTGCTG TACGGCGCGG GCGACCCCGG CGCGATCATC
GACGTGCAGA CCAAGACGGC CGACGGCGAG CGCGTGCGCG AAGCCGGCGT GCAGTTCGGC
AACTATGCGC GCAAGCAGTT CATGATCGAC GTCGGTGACA AGCTCGACGC GGACGGCAAG
TATGCGTACC GGTTCGTCGG CGTCGCGCGC GACGGCAACG CGCTGACCGG CCCGAACAAC
GACCAGCGCG TCGCGCTCGC ACCGACGTTC CGCTGGCGCC CCGACGCCGA TACGTCGCTG
ACGCTGTCGG CCACGTACCT GCAGGACTGG GGCGACATCT CGTCGAACTT CCTGCCGGCG
CAAGGCACGG TGCTGCCGAA CCCGAACGGG CAGCTCGACA AGGACGTCTA CGGCGGCGAC
CCGAATTTCA ACTACTACCG CAAGAAGCAG TGGTCGCTCG GCTATCAGTT CGAGCGGAAC
CTGAACTCGA TGTGGACGTT CCGGCAGAAC GTGCGCTGGA TGCACCTGTC GCTCGACAAC
GGTTCGGTGT TCGGCGCGGG CTTCGCGGAC GGCAGCCTGA CCGACATCAA CCGCTGGGCC
GGCGTGTTCC AGACGAACTA CAGCCGCTTC GACATCGACA ACAACCTGCA GGGCCGCTTC
GGCACCGGGC CGCTCGAGCA CACGCTGCTG CTCGGCTTCC AGTACAACCG GCAGACCGCG
ACCGACAGCG AATGGCTGGC CGCCGCGCCG ACGCTGAACA TCTACAACCC GGTCTACACG
CCGGTCACGC TGTCCGTGTT TTCGCCGCCG AACACCACGT ACCGTACCAA CACGTACACG
ACGATGAACA CGTTCGGGCT GTACGTGCAG GACCAGATCA AGTGGAACCG CTGGACGCTG
ACGCTCGGCG GCCGCGAGGA CTGGGTCAAC CAGCGGCTGG ACGACCGCGC GGGCGGCACG
CAGTCGAAGG CCGACATCAC GGCGTTCACC GGCCGCGTGG GCCTTACGTA CCAGGGCGAC
TACGGGCTGT CGCCGTACAT CAGCTACGCG ACGTCGTTCA ACCCGCTGAT CGGCGTGAAC
CTGTACGGCG GCGGCCTGCC GCAGCCCACG CGCGGCAAGC AGATCGAGGC CGGCCTGCGC
TGGCAGCCGC CGGGCAAGAA CCTGATGCTG AACGCGGCGA TCTACCAGAT CAACCAGACC
AACGTGCTCA CGTCGACGCC GCTGAATCTC GACCCGTCCG GTACGACGTC GATCCAGACC
GGCGAAGTGC GTTCGCGCGG CATCGAGCTG AGCGCGACCG GCAAGCTCAC GCGGAACCTG
TCGCTGATCG CGTCCTACGT GTACCAGGAC GTGAAGAACG TGAAGGCCAA CGACGCGTCG
CTGAACAACT GGCCGGTCGA CATTCCGCGG CCGCGCCAGA TGGCGTCGCT GTGGGCTGAC
TGGACGTGGC ACACGGGGCC GCTCACGGGC TTCGGCCTGG GCGGCGGCGT GCGTTACCAG
AGCGCGGCGG CCGGTGCGGC GGACAACTCG CTGACGGTAT CGAGCTACAC GCTGTTCGAC
GCGGGCGTGC ACTACGACAC GCGTAACTGG CGCTTTGCCG TGAACGGGAC GAACCTGTTC
AACCGCCACT ACATCAGCGG TTGCCAGTCG ACGAGCGTGT GCATTTTCGG TACCGACCGT
ACGGTGATCG CCACCGCGAA ATACAACTGG TGA
 
Protein sequence
MEWATGTRLR AIAAAASVTF GMAAGHAFAQ TAPAVNAGAA TSTDSARNGA AASAGASAPN 
GPATGTLPAI NVNAGSEGDG TVGLVAKRSR TGTKTDTSIN EIPQTINVVT AQQIEMTGAT
DVNAALRYVP GFSSYGSDNR SDWYAALRGF TPTAYVNGLQ VPNTLNLSSW RVDPYMIDSI
TVLRGPTSVL YGAGDPGAII DVQTKTADGE RVREAGVQFG NYARKQFMID VGDKLDADGK
YAYRFVGVAR DGNALTGPNN DQRVALAPTF RWRPDADTSL TLSATYLQDW GDISSNFLPA
QGTVLPNPNG QLDKDVYGGD PNFNYYRKKQ WSLGYQFERN LNSMWTFRQN VRWMHLSLDN
GSVFGAGFAD GSLTDINRWA GVFQTNYSRF DIDNNLQGRF GTGPLEHTLL LGFQYNRQTA
TDSEWLAAAP TLNIYNPVYT PVTLSVFSPP NTTYRTNTYT TMNTFGLYVQ DQIKWNRWTL
TLGGREDWVN QRLDDRAGGT QSKADITAFT GRVGLTYQGD YGLSPYISYA TSFNPLIGVN
LYGGGLPQPT RGKQIEAGLR WQPPGKNLML NAAIYQINQT NVLTSTPLNL DPSGTTSIQT
GEVRSRGIEL SATGKLTRNL SLIASYVYQD VKNVKANDAS LNNWPVDIPR PRQMASLWAD
WTWHTGPLTG FGLGGGVRYQ SAAAGAADNS LTVSSYTLFD AGVHYDTRNW RFAVNGTNLF
NRHYISGCQS TSVCIFGTDR TVIATAKYNW