Gene Bamb_1389 details

Gene Information

• Locus tag: Bamb_1389
• ID: 4309613
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia ambifaria AMMD
• Kingdom: Bacteria
• Replicon accession: NC_008390
• Strand: +
• Start bp: 1527790
• End bp: 1529616
• Gene Length: 1827 bp
• Protein Length: 608 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 638149200
• Product: GTP-binding protein TypA
• Protein accession: YP_773281
• Protein GI: 115351442
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG1217] Predicted membrane GTPase involved in stress response
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR01394] GTP-binding protein TypA/BipA

Plasmid Coverage information

• Num covering plasmid clones: 24
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCCGCG CCCTTCGCAA TATCGCCATC ATCGCCCACG TCGACCACGG CAAGACCACG 
CTCGTCGACC AACTGCTCCG CCAGTCCGGC ACCTTCCGCG AGAACCAGCA GATTGCCGAA 
CGGGTGATGG ACTCGAACGA CATCGAAAAA GAGCGCGGGA TCACGATTCT CGCGAAGAAC 
TGCGCGGTCG AATACGAAGG CACGCACATC AACATCGTCG ACACGCCGGG GCACGCGGAC 
TTCGGCGGCG AAGTGGAGCG CGTGCTGTCG ATGGTCGACT CGGTGCTGCT GCTCGTCGAC 
GCGGTCGAAG GCCCGATGCC GCAGACCCGC TTCGTCACGA AGAAGGCGCT CGCGCTCGGC 
CTGAAGCCGA TCGTCATCGT CAACAAGATC GATCGTCCGG GTGCGCGGAT CGACTGGGTC 
ATCAACCAGA CCTTCGACCT GTTCGACAAG CTGGGCGCGA CCGAAGAGCA GCTCGACTTC 
CCGATCGTCT ACGCATCGGG CCTGAACGGC TATGCGTCGC TCGATCCGGC CGCGCGCGAG 
GGCGACATGC GCCCGCTGTT CGAGGCGGTC CTCCAGCACG TGCCGGTCCG TCCGGCCGAT 
CCGGACGCGC CGCTGCAGCT GCAGATCACG TCGCTCGACT ATTCGACGTA CGTCGGCCGG 
ATCGGCGTCG GCCGCATCAC GCGTGGCCGC ATCAAGCCGG GTCAGCCGGT CGCGATGCGC 
TTCGGCCCGG AAGGCGATGT GCTGAACCGC AAGATCAACC AGGTGCTGTC GTTCACGGGC 
CTCGAGCGCG TGCAGGTCGA CTCGGCCGAA GCAGGCGACA TCGTGCTGAT CAACGGTATT 
GAAGATGTCG GCATCGGCGC GACGATCTGC GCGGTGGATA CGCCGGAAGC GCTGCCGATG 
ATCACCGTCG ACGAGCCGAC GCTGACGATG AACTTCCTCG TCAACTCGTC GCCGCTGGCC 
GGCCGCGAAG GCAAGTTCGT CACGAGCCGC CAGATCCGCG ATCGCCTGAT GAAGGAACTG 
AACCACAACG TCGCGCTGCG CGTGAAGGAC ACGGGCGACG AAACGGTGTT CGAAGTGTCG 
GGCCGCGGCG AACTGCACCT GACGATTCTC GTCGAAAACA TGCGCCGTGA AGGCTATGAG 
CTGGCCGTGT CGCGTCCGCG CGTCGTGATG CAGGAAATCG ACGGCGTGCG CCACGAGCCG 
TACGAGCTGC TGACCGTCGA CGTCGAAGAC GAGCACCAGG GCGGCGTGAT GGAAGAGCTC 
GGCCGCCGCA AGGGCGAAAT GCTCGACATG GCGTCGGACG GCCGCGGCCG CACGCGTCTG 
GAATACAAGA TCTCGGCGCG TGGCCTGATC GGCTTCCAGA GCGAGTTCCT GACGCTCACG 
CGCGGCACGG GCCTGATGAG CCACATCTTC GACTCGTACG CACCGGTCAA GGACGGCTCG 
GTCTTCGAGC GCCGCAACGG CGTGCTGATC TCGCAGGACG ACGGCGCGGC AGTGGCATAC 
GCACTGTGGA AGCTGCAGGA TCGCGGTCGC ATGTTCGTGA AGCCGGGCGA CGCGCTGTAT 
GAGGGCATGA TCATCGGCAT CCACAGCCGC GACAACGACC TCGTCGTGAA CCCGATCAAG 
GGCAAGCAGC TGACCAACGT GCGTGCGTCG GGTACCGACG AAGCCGTGCG TCTCGTGCCG 
CCGGTCCAGA TGTCGCTCGA ATACGCGGTC GAATTCATCG ACGACGACGA GCTCGTCGAA 
GTGACGCCGC AGTCGATTCG CCTGCGCAAG CGCTTCCTGA AGGAGCACGA GCGTCGCCGC 
GCGAGCCGCG AAGGCGCGGT CGACTAA 

 

Protein sequence

MTRALRNIAI IAHVDHGKTT LVDQLLRQSG TFRENQQIAE RVMDSNDIEK ERGITILAKN 
CAVEYEGTHI NIVDTPGHAD FGGEVERVLS MVDSVLLLVD AVEGPMPQTR FVTKKALALG 
LKPIVIVNKI DRPGARIDWV INQTFDLFDK LGATEEQLDF PIVYASGLNG YASLDPAARE 
GDMRPLFEAV LQHVPVRPAD PDAPLQLQIT SLDYSTYVGR IGVGRITRGR IKPGQPVAMR 
FGPEGDVLNR KINQVLSFTG LERVQVDSAE AGDIVLINGI EDVGIGATIC AVDTPEALPM 
ITVDEPTLTM NFLVNSSPLA GREGKFVTSR QIRDRLMKEL NHNVALRVKD TGDETVFEVS 
GRGELHLTIL VENMRREGYE LAVSRPRVVM QEIDGVRHEP YELLTVDVED EHQGGVMEEL 
GRRKGEMLDM ASDGRGRTRL EYKISARGLI GFQSEFLTLT RGTGLMSHIF DSYAPVKDGS 
VFERRNGVLI SQDDGAAVAY ALWKLQDRGR MFVKPGDALY EGMIIGIHSR DNDLVVNPIK 
GKQLTNVRAS GTDEAVRLVP PVQMSLEYAV EFIDDDELVE VTPQSIRLRK RFLKEHERRR 
ASREGAVD