| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_1379 |
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| Symbol | |
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| ID | 4309603 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008390 |
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| Strand | + |
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| Start bp | 1513898 |
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| End bp | 1515616 |
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| Gene Length | 1719 bp |
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| Protein Length | 572 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 638149190 |
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| Product | pseudouridine synthase, Rsu |
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| Protein accession | YP_773271 |
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| Protein GI | 115351432 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGACAGATA TCCACGATAT TGAATCGTCC GCGCCTGCCG CACAGGCCGC GCGTGCCGAC
GATGCGCCGG AGCAGGACGC TCCGGCCGCG GGTGGTGACG AGCGTCCCCG CCGCGGCCTG
CGGCGCGGTC CGCGCAGCCT GATCGCGCGT CGCCGCGCGG CGGCCAAGTC GAAGGGCGCC
GAGGGCGAGT CGCAGGACGG CGAAGGCGCA GACGCGCCGC CGGCCGAGGC CGCCGAAGCG
CAGCCCGCAC GCGCACCGCG CAAGGAAGGC GCGGCCAGGG GCGGCCGCAA GCCGGCCGCC
AAGCGTGAAG GTGCACCCAA GAGTGCGCAG GGCGGACAAG GCGGCCAGGG GCGGCGTGGC
AGCCCGGCGA AAGCCGAGGG CGGCGCGGCG AAGGTCGAAG GCGATGCAGC GTCGCAGGAC
GATCTGTTCG CCTATGTGAC GTCGCCGGCC TTCGACGCGG ACAACTCCGC GGGCGGCAGC
GGCGTGCGTG CACCGATGCT GCGGCGCGGT CGTGCGCAGC CGACGAACAA GCGCGTGCTG
TCGCCGGACG ACGACGCACC GAAGCTTCAC AAGGTGCTCG CGGAAGCCGG CATGGGCTCG
CGCCGCGAAA TGGAAGAGCT GATCGTCGCC GGCCGCGTGT CGGTGAACGG TGAGCCCGCG
CACATCGGCC AGCGCATCAT GCCGACCGAC CAGGTCCGCA TCAATGGCAA GCCGGTCAAG
CGCAAGCTGC CGAACAAGCC GCCGCGCGTG CTGCTGTACC ACAAGCCGAC GGGCGAGATC
GTCAGCCATG CGGATCCGGA AGGTCGTCCG TCGGTGTTCG ATCGCCTGCC GCCGATGAAG
ACGGCGAAAT GGCTCGCGGT GGGCCGCCTC GACTTCAACA CCGAAGGTCT GCTGATGCTG
ACCACGTCCG GCGATCTCGC GAACCGCTTC ATGCATCCGC GTTATAGCGT CGAGCGCGAG
TATGCGGTGC GTGTCGTCGG CGAGCTGTCC GAAGGCATGC GGCAGAAGCT GCTGCATGGC
GTCGAGCTCG ATGACGGCCC GGCGAACTTC CTGCGCATCC GCGACGGCGG CGGCGAAGGC
ACGAACCACT GGTATCACGT TGCGCTGGCC GAAGGCCGCA ACCGCGAAGT GCGCCGTATG
TTCGAAGCGG CCGGCCTGAT GGTGAGCCGC CTGATCCGTA CGCGCCACGG TCCGATCCCG
CTGCCGCGCG GCCTGAAGCG CGGCCGTTGG GAAGAGCTCG ACGAGGCGCA GGTGCGCAAG
CTGATGGCGA CCGTCGGCCT GAAGGCGCCG TCCGAGGAAA AGGGCAAGCG CGGTGGCAGT
GGGCCGGCCG AGCGCCGCCA GCCGGATCCG ATGCAGACGT CGATGGGCTT CATCAGCCGT
GAGCCGGTGC TGACCACGCA TGGTCAACTC GACCAGCCGC GTCGCGGTGG CGGTCGGCGC
GGCGGCCCCG GCCTGCCGGG CCTGAGCGGC TACGGCAGCC TGCCGGTTTC GCCGTCGGGC
CATGGCAACC GCTCGGGTGG CGGTCGCGAT GTCGACGGCA ATCGCGCGTC GTATGGCGCG
GGTCCCAAGC GTGAAGGCGG CGCGGGCGCC AAGCGTGGCG GCAGCAAGGG CGGCGGTAAC
CGCAACCCGA ACGGCAATCG CGCCGAAGGC GGCGGCAACA CCGGTGGTGG TGCACGCGGC
GGTCAGCGCC CGCAGCGCAA TCGCTCGCGC GGTCGCTGA
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| Protein sequence | MTDIHDIESS APAAQAARAD DAPEQDAPAA GGDERPRRGL RRGPRSLIAR RRAAAKSKGA
EGESQDGEGA DAPPAEAAEA QPARAPRKEG AARGGRKPAA KREGAPKSAQ GGQGGQGRRG
SPAKAEGGAA KVEGDAASQD DLFAYVTSPA FDADNSAGGS GVRAPMLRRG RAQPTNKRVL
SPDDDAPKLH KVLAEAGMGS RREMEELIVA GRVSVNGEPA HIGQRIMPTD QVRINGKPVK
RKLPNKPPRV LLYHKPTGEI VSHADPEGRP SVFDRLPPMK TAKWLAVGRL DFNTEGLLML
TTSGDLANRF MHPRYSVERE YAVRVVGELS EGMRQKLLHG VELDDGPANF LRIRDGGGEG
TNHWYHVALA EGRNREVRRM FEAAGLMVSR LIRTRHGPIP LPRGLKRGRW EELDEAQVRK
LMATVGLKAP SEEKGKRGGS GPAERRQPDP MQTSMGFISR EPVLTTHGQL DQPRRGGGRR
GGPGLPGLSG YGSLPVSPSG HGNRSGGGRD VDGNRASYGA GPKREGGAGA KRGGSKGGGN
RNPNGNRAEG GGNTGGGARG GQRPQRNRSR GR
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